Table 3.
Isolateb | Beijing | WVMV-YZ-clone 2 | SUX-1-HZ | WVMV-JX | WA | New Zealand | Netherlands | Australia | Th-W2259 |
---|---|---|---|---|---|---|---|---|---|
Beijing | 0.01140 | 0.01136 | 0.05976 | 0.01147 | 0.05983 | 0.07183 | 0.07183 | 0.05983 | |
WVMV-YZ-clone 2 | 0.01942 | 0.02282 | 0.07199 | 0.02303 | 0.07208 | 0.08413 | 0.08413 | 0.07208 | |
SUX-1-HZ | 0.14947 | 0.17118 | 0.04733 | 0.02295 | 0.07183 | 0.05926 | 0.05926 | 0.07183 | |
WVMV-JX | 0.22151 | 0.20938 | 0.18937 | 0.05908 | 0.02264 | 0.01121 | 0.01121 | 0.02264 | |
WA | 0.16595 | 0.15510 | 0.14719 | 0.11682 | 0.05915 | 0.07102 | 0.07102 | 0.05915 | |
New Zealand | 0.20234 | 0.19080 | 0.20006 | 0.04811 | 0.12119 | 0.01128 | 0.01128 | 0.00000 | |
Netherlands | 0.20831 | 0.19660 | 0.19420 | 0.04387 | 0.12630 | 0.00381 | 0.00000 | 0.01128 | |
Australia | 0.20831 | 0.19660 | 0.19420 | 0.04387 | 0.12630 | 0.00381 | 0.00000 | 0.01128 | |
Th-W2259 | 0.19723 | 0.18577 | 0.20497 | 0.05215 | 0.13590 | 0.01149 | 0.01539 | 0.01539 |
The nucleotide and amino acid sequence distances were assessed using Tamura three-parameter model with a gamma distribution of site-rate variants across four categories and Jones-Taylor-Thornton model, respectively in Mega 6.0 (Tamura et al. 2013). The nucleotide and amino acid distances are presented in the lower-left and upper-right of the table. A sequence of soybean mosaic virus (accession no. FJ640971) was used as the outgroup. Standard errors are not shown.
Isolates Beijing and WVMV-YZ-clone 2 belong to East Asian-1, SUX-1-HZ to East Asian-2, WVMV-JX to East Asian-3, WA to North American, and Australia, Netherlands, New Zealand and Th-W2259 (studied in this work) to World group (Fig. 2).