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. 2020 Feb 3;114:e190366. doi: 10.1590/0074-02760190366

TABLE. Primers used in quantitative real-time polymerase chain reaction (qPCR).

Target gene (Accession number) Sequence 5’-3’ (Forward and reverse) Tm CG % Amplicon length (bp)
HDAC1 (NM_008228.2) CCGGTTAGGTTGCTTCAATC 59.6 50 118
AACATTCCGGATGGTGTAGC 59.8 50
HDAC2 (NM_008229.2) TATTATGGCCAGGGTCATCC 59.6 50 119
TCAGCAGTGGCTTTATGAGG 59 50
HDAC3 (NM_010411.2) ATGCAGGGTTTCACCAAGAG 60.1 50 117
TGTTGCTCCTTGCAGAGATG 60.1 50
HDAC4 (NM_207225.2) CCGCCAGCAGTTTTAAAGTC 59.9 50 92
ACCGAATGGAGATGCTCAAC 60.1 50
HDAC5 (NM_001077696.1) ACTTTCCCCTCCGTAAAACG 60.3 50 116
AACAGTGCCATCCTTTCGAC 60.1 50
HDAC6 (NM_010413.3) ATCTCAGCTGGCTTTGATGC 60.5 50 116
ATAATACGGCCACCAGCAAG 60.0 50
HDAC7 (NM_001204275.1) ATGATGGCCTGGAACATAGG 59.8 50 75
GATGCTGCTGCAGAGAAATG 59.7 50
HDAC8 (NM_027382.4) AGGGAATCTGAAGCATGTGG 60.1 50 131
CAAATTTCCCCTGCAGTCAC 60.5 50
HDAC9 (NM_001271386.1) TTTGAGGTGGCAGAATCCTC 60.2 50 106
GAGCTGAAGCCTCATTTTCG 60.1 50
HDAC10 (NM_199198.2) AACAGGAGCTGTGCACAATG 59.9 50 143
TCCTCTGCAGCCCATATTTC 60.2 50
HDAC11 (NM_144919.2) TGATGGGGTTGAACACTGAG 59.5 50 128
AGCAGCCCCTTAAAAACTCC 59.7 50
Sirt1 (NM_019812.3) GCCCTCAATTTCTGTTCTGC 59.8 50 150
TTTTGAGTGCTCCAGACACG 60.0 50
Sirt2 (NM_019812.3) ACGGCTGCTCATTAACAAGG 60.3 50 88
GTCAAAATCCATGCCACCTC 60.3 50
Sirt3 (NM_001177804.1) CATATGGGCTGATGTGATGG 59.8 50 141
AGATCTGCCAAAGCGAAGTC 59.6 50
Sirt4 (NM_001167691.1) CGAGCAAAAGCTCCCAATAG 60.0 50 145
TTCCAGCCTTTGGACATCAG 61.2 50
Sirt5 (NM_178848.3) CCAGCTTTAGCAGGAAAAGG 59.1 50 139
CCAGGTTTTCTCCAAACCAC 59.4 50
Sirt6 (NM_181586.3) TGTCCAACACAGCTCCTTTC 58.9 50 97
CTTCCACATGTGTGGGATTC 58.8 50
Sirt7 (NM_001363439.1) AGCTTCGGGATACCATTGTG 60 50 104
CAGGATTGTGTCTGCTTTGC 59.4 50
β-Actin (NM_007393.5) TTGCTGACAGGATGCAGAAG 61.1 50 147
TGATCCACATCTGCTGGAAG 59.8 50

bp: base pair; CG: cytosine and guanine content; HDAC: histone deacetylase 1-11; Sirt: Sirtuin 1-7; Tm (melting temperature) was calculated at default settings of 0.25 µM oligo concentration and 50 µM Na. Primers were designed using Primer3Plus software (http://www.bioinformatics.nl/cgi-bin/primer3plus/primer3plus.cgi).