Key resources table.
| Reagent type (species) or resource |
Designation | Source or reference | Identifiers | Additional information |
|---|---|---|---|---|
| Strain (Mus musculus) | C57Bl/6J | The Jackson Laboratory | Cat# JAX:000664 RRID: IMSR_JAX:000664 |
|
| Genetic reagent (Mus musculus) | VGAT-IRES-Cre | The Jackson Laboratory | Cat# JAX: 016962 RRID: IMSR_JAX:016962 |
|
| Genetic reagent (Mus musculus) | DAT-IRES-Cre | The Jackson Laboratory | Cat# JAX: 006660 RRID: IMSR_JAX:006660 |
|
| Genetic reagent (non-pseudotyped G-deleted rabies virus) | B19-SADdG- EGFP, RbV-GFP |
Other | N/A | Generated in-house (see Materials and methods) 109 IU/mL |
| Genetic reagent (pseudotyped G-deleted rabies virus) | EnvA-RbV-GFP | Janelia Viral Tools facility |
Addgene# 52487 RRID: Addgene_52487 |
108 IU/mL |
| Commercial assay, kit | RNAscope V1 fluorescent multiplex detection assay reagents | ACDBio | Cat#320851 | |
| Commerical assay, kit | RNAscope V1 fluorescent multiplex detection assay probes | ACDBio | Cat# 456781 Cat# 317321 Cat# 404631 Cat# 556241 Cat# 436381 Cat# 519911 Cat# 437701 Cat# 517421 Cat# 423321 Cat# 319171 Cat# 319191 Cat# 315441 |
V-RABV-gp1
Gpr151 Sst Plch1 Pbx3 Rbfox1 Chrm3 Vgf Cre Slc17a6 Slc32a1 Slc6a3 |
| Software, algorithm | inDrops pipeline (Python) |
PMID: 26000487 | N/A | https://github.com/indrops/indrops |
| Software, algorithm | R 3.4.4 | R project for statistical computing | RRID:SCR_001905 | https://cran.r-project.org/ |
| Software, algorithm | Seurat 2.3.4 | PMID: 29608179 | RRID:SCR_016341 | https://satijalab.org/seurat/ |
| Software, algorithm | MAST 1.4.1 | PMID: 26653891 | RRID:SCR_016340 | https://bioconductor.org/packages/release/bioc/html/MAST.html |
| Software, algorithm | MATLAB (R2015a) | MathWorks | RRID:SCR_001622 | |
| Software, algorithm | Fiji | PMID: 22743772 | RRID:SCR_002285 | https://imagej.net/Fiji |