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. 2020 Jan 20;21(2):671. doi: 10.3390/ijms21020671

Table 1.

Statistical analysis of RNA-seq data obtained of diapause-destined eggs (non-treated) and diapause-terminated eggs (HCl-treated).

SampleName Raw Reads Clean Reads Clean Bases Total Mapped ≥Q30 GC Content
HCl-treated_1 48,961,256 47,914,231 7,012,354,124 95.49% 95.17% 43.33%
HCl-treated_2 49,151,346 48,032,314 7,032,354,785 95.33% 95.02% 43.62%
HCl-treated_3 49,564,521 48,462,345 7,094,523,651 95.41% 95.00% 43.46%
Non-treated_1 49,254,256 48,108,659 7,045,898,541 95.33% 94.88% 43.63%
Non-treated_2 49,422,345 48,188,754 7,034,562,547 94.78% 94.84% 43.77%
Non-treated_3 49,802,145 48,657,854 7,117,854,216 95.11% 95.03% 43.66%
HCl-treated vs. Non-treated DEGs Upregulated Downregulated
Quantity 1732 856 876