Table 1.
SampleName | Raw Reads | Clean Reads | Clean Bases | Total Mapped | ≥Q30 | GC Content |
---|---|---|---|---|---|---|
HCl-treated_1 | 48,961,256 | 47,914,231 | 7,012,354,124 | 95.49% | 95.17% | 43.33% |
HCl-treated_2 | 49,151,346 | 48,032,314 | 7,032,354,785 | 95.33% | 95.02% | 43.62% |
HCl-treated_3 | 49,564,521 | 48,462,345 | 7,094,523,651 | 95.41% | 95.00% | 43.46% |
Non-treated_1 | 49,254,256 | 48,108,659 | 7,045,898,541 | 95.33% | 94.88% | 43.63% |
Non-treated_2 | 49,422,345 | 48,188,754 | 7,034,562,547 | 94.78% | 94.84% | 43.77% |
Non-treated_3 | 49,802,145 | 48,657,854 | 7,117,854,216 | 95.11% | 95.03% | 43.66% |
HCl-treated vs. Non-treated | DEGs | Upregulated | Downregulated | |||
Quantity | 1732 | 856 | 876 |