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. 2020 Feb 11;18:12. doi: 10.1186/s12915-020-0744-3

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© The Author(s). 2020

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 6 — Transcriptional activity of transposable elements (TEs). a TE family transcription levels across all 19 genomes expressed as log₁₀ (CPM + 1). b Average transcription levels of TE superfamilies across all genomes expressed as average log₁₀ (CPM + 1). c Spearman correlation matrix of four TE metrics including counts, relative frequencies, average length and transcription both at the level of TE families and superfamilies. d Variation of TE transcription (average log₁₀ (CPM + 1)) as a function of TE counts (left panel) or average TE length (right panel). Curves in the left panel show the logarithmic linear regression given by the linear model log₁₀ (CPM + 1) ~ log₁₀ (TE count). The highly expressed LARD_Thrym family (RLX) is highlighted using arrows (panels a, b and d)