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Pipeline computation time (in minutes) results and speedup of SparkRA compared to Halvade-RNA running on the SURFsara cluster.
| Pipeline Stage | Halvade | SparkRA | Speedup |
|---|---|---|---|
| Part 1: Mapping | 54.7 | 47.2 | 1.16 |
| Parts 2 and 3: Sorting, Picard & GATK | 26.2 | 19.3 | 1.36 |
| Total pipeline time | 80.9 | 66.5 | 1.22 |
