Table 4.
Summary of the gene functions and annotation based on the reference genomes available in the public database of the putatively adaptive panel of the SNP loci of T. ilisha populations.
| Locus Name | GenBank Accession Number | Gene Name 1 | Species | Biological Function 2 |
|---|---|---|---|---|
| SCED01086260.1:268 | XM_012815555.1 | nrxn3b * | Clupea harengus | Neuronal cell surface protein |
| SCED01010228.1:165 | XM_012823864.1 | TRIM67 * | C. harengus | Neuron projection development |
| SCED01084234.1:74 | XM_012823924.1 | TTC13 * | C. harengus | Unknown |
| SCED01037310.1:1343 | XM_012823959.1 | MTHFD1 * | C. harengus | Somite and heart development |
| SCED01066042.1:124 | XM_012828951.1 | Grik2 * | C. harengus | Neuronal activity |
| SCED01072826.1:68 | XM_012835569.1 | EXTL3 * | C. harengus | Biosynthesis of polysaccharides |
| SCED01077141.1:127 | XM_012839387.1 | PLCB1 * | C. harengus | Lipid degradation and metabolism |
| SCED01094462.1:170 | XM_017701045.1 | ITPKB * | Pygocentrus nattereri | Metabolic process, ATP binding |
| SCED01094733.1:323 | XM_023923858.1 | EXOC8 * | Cyanistes caeruleus | Exocytosis and protein transport |
| SCED01029258.1:4937 | XM_028970071.1 | NFIB * | Denticeps clupeoides | Differentiation, DNA replication |
| SCED01007742.1:237924 | XM_012823803.1 | FBXO11 a | C. harengus | Cellular protein modification |
| SCED01001444.1:144867 | XM_008399996.2 | PRLHR | Poecilia reticulata | Feeding behavior, metabolic process |
| SCED01000736.1:64807 | XM_012815189.1 | U2SURP | C. harengus | mRNA splicing |
| SCED01012000.1:38243 | XM_012822717.1 | MYO6 | C. harengus | Movement, endocytosis |
| SCED01013770.1:62161 | XM_012824084.1 | Gmps | C. harengus | Guanosine monophosphate biosynthesis |
| SCED01008867.1:80237 | XM_012827367.1 | EPR1 | C. harengus | Cellular membrane biosynthesis |
| SCED01003175.1:15453 | XM_012827500.1 | Elfn2 | C. harengus | Protein phosphatase inhibitor |
| SCED01030760.1:318 | XM_012828774.1 | SLC7A10 | C. harengus | Amino acids transport |
| SCED01009040.1:131462 | XM_012828861.1 | BLMH | C. harengus | Response to toxic substances |
| SCED01011615.1:5090 | XM_012830641.1 | AADAT | C. harengus | Biosynthetic and metabolic process |
| SCED01010819.1:27239 | XM_012830963.1 | SIDT2 | C. harengus | Glucose homeostasis |
| SCED01020677.1:12909 | XM_012832078.1 | MYRF | C. harengus | Differentiation and transcription |
| SCED01010957.1:39086 | XM_012832114.1 | SFI1 | C. harengus | Mitotic cell cycle regulation |
| SCED01005892.1:34793 | XM_012832603.1 | GABBR1 | C. harengus | Neuronal cell signaling |
| SCED01000975.1:25910 | XM_012833200.1 | PDHA1 | C. harengus | Glucose metabolic process |
| SCED01010852.1:64989 | XM_012835295.1 | ACIN1 | C. harengus | Apoptosis and mRNA processing |
| SCED01002831.1:133084 | XM_012837338.1 | TUBGCP6 | C. harengus | Microtubule nucleation |
| SCED01000696.1:30199 | XM_012837568.1 | KDM6A | C. harengus | Embryonic development |
| SCED01003627.1:221050 | XM_012838801.1 | CCNF | C. harengus | Mitotic cell division control |
| SCED01010418.1:19123 | XM_012840278.1 | Herc1 | C. harengus | Neuromuscular process |
| SCED01024554.1:1059 | XM_012841400.1 | ARAP1 | C. harengus | GTPase activity |
| SCED01022525.1:8702 | XM_012841845.1 | PPP1R9B | C. harengus | Cell cycle control and neurogenesis |
| SCED01000852.1:137973 | XM_012842171.1 | PGM1 | C. harengus | Synthesis glucose and glycogen |
| SCED01062845.1:131 | XM_015395566.1 | MPEG1 | Cyprinodon variegatus | Immune response against bacteria |
| SCED01008207.1:36816 | XM_026272763.1 | UBR3 | Carassius auratus | Embryonic development |
| SCED01003543.1:101682 | XR_001162390.1 | SRP68 | C. harengus | Role in targeting secreting protein |
1 Gene names are abbreviated following the UniPort database (https://www.uniprot.org). For details of the gene names, please see the supplementary Microsoft excel file. 2 Only the most important biological functions of the specific genes in vertebrates from UniPort database are reported. Genes marked with an * are putatively SNP loci, identified by both the FST OutFLANK and pcadapt approaches; genes marked with an a are putatively SNP loci, identified by the FST OutFLANK approach only, and the remaining unmarked genes are putatively SNP loci, identified by the pcadapt approach only.