Table 2.
Summary of RNA-seq reads generated in the study
| Sample name | Raw reads | Clean reads | Clean bases | Error rate (%) | Q20 (%) | Q30 (%) | GC content (%) |
|---|---|---|---|---|---|---|---|
| Vd-X-6a | 20,755,066 | 19,829,720 | 2.97G | 0.03 | 94.52 | 86.95 | 58.14 |
| Vd-X-6b | 20,008,568 | 19,162,740 | 2.87G | 0.03 | 95.13 | 88.19 | 58.81 |
| Vd-X-12a | 20,745,450 | 19,871,376 | 2.98G | 0.03 | 94.57 | 87.09 | 57.72 |
| Vd-X-12b | 17,752,478 | 15,961,608 | 2.39G | 0.02 | 97.07 | 91.35 | 58.61 |
| Vd-X-24a | 18,562,576 | 17,673,746 | 2.65G | 0.03 | 94.78 | 87.43 | 58.56 |
| Vd-X-24b | 18,713,224 | 17,855,894 | 2.68G | 0.03 | 94.55 | 86.95 | 58.54 |
| Vd-X-48a | 22,863,130 | 21,469,914 | 3.22G | 0.03 | 94.65 | 87.59 | 51.86 |
| Vd-X-48b | 21,450,220 | 20,335,092 | 3.05G | 0.03 | 94.82 | 87.74 | 53.99 |
| Vd-Z-6a | 19,384,506 | 18,572,808 | 2.79G | 0.03 | 94.54 | 86.96 | 58.28 |
| Vd-Z-6b | 18,947,746 | 16,766,560 | 2.51G | 0.02 | 95.94 | 89.19 | 58.19 |
| Vd-Z-12a | 19,116,156 | 16,262,760 | 2.44G | 0.02 | 96.47 | 90.18 | 58.60 |
| Vd-Z-12b | 15,846,552 | 13,820,768 | 2.07G | 0.02 | 97.05 | 90.95 | 56.33 |
| Vd-Z-24a | 22,527,850 | 19,634,838 | 2.95G | 0.02 | 97.92 | 93.16 | 58.10 |
| Vd-Z-24b | 22,678,986 | 19,618,638 | 2.94G | 0.02 | 97.87 | 93.04 | 57.99 |
| Vd-Z-48a | 18,786,644 | 18,043,658 | 2.71G | 0.02 | 94.62 | 87.75 | 51.51 |
| Vd-Z-48b | 16,083,890 | 15,364,870 | 2.3G | 0.02 | 94.84 | 88.07 | 53.31 |
| Vd-H-6a | 17,277,272 | 15,290,714 | 2.29G | 0.03 | 96.78 | 90.34 | 56.08 |
| Vd-H-6b | 23,964,812 | 21,120,448 | 3.17G | 0.02 | 97.89 | 93.15 | 58.23 |
| Vd-H-12a | 16,150,508 | 13,729,988 | 2.06G | 0.02 | 97.11 | 90.87 | 58.16 |
| Vd-H-12b | 22,302,818 | 19,253,012 | 2.89G | 0.02 | 97.81 | 92.96 | 56.86 |
| Vd-H-24a | 14,972,868 | 13,927,336 | 2.09G | 0.03 | 96.72 | 90.13 | 57.15 |
| Vd-H-24b | 14,514,160 | 13,125,772 | 1.97G | 0.03 | 96.76 | 90.26 | 56.60 |
| Vd-H-48a | 18,826,776 | 16,337,922 | 2.45G | 0.02 | 96.20 | 89.63 | 46.23 |
| Vd-H-48b | 17,007,508 | 14,591,964 | 2.19G | 0.02 | 95.70 | 89.13 | 53.93 |
| Vd-W-6a | 15,061,222 | 13,654,598 | 2.05G | 0.03 | 96.88 | 90.43 | 57.86 |
| Vd-W-6b | 22,050,470 | 21,031,720 | 3.15G | 0.02 | 96.27 | 90.86 | 56.02 |
| Vd-W-12a | 22,264,268 | 21,134,386 | 3.17G | 0.02 | 96.08 | 90.46 | 55.72 |
| Vd-W-12b | 20,529,690 | 19,622,372 | 2.94G | 0.02 | 95.78 | 89.43 | 57.29 |
| Vd-W-24a | 15,761,394 | 15,360,174 | 2.3G | 0.02 | 94.86 | 88.07 | 54.29 |
| Vd-W-24b | 23,275,930 | 22,685,328 | 3.4G | 0.02 | 95.71 | 89.64 | 58.51 |
| Vd-W-48a | 18,328,720 | 17,868,854 | 2.68G | 0.02 | 94.97 | 88.46 | 48.13 |
| Vd-W-48b | 22,437,742 | 21,421,106 | 3.21G | 0.03 | 94.41 | 87.08 | 57.12 |
| Vd-0a (CKa) | 16,237,488 | 15,825,126 | 2.37G | 0.02 | 95.37 | 88.77 | 58.51 |
| Vd-0b (CKb) | 14,193,496 | 13,833,776 | 2.08G | 0.02 | 95.30 | 88.54 | 58.72 |