Table 6.
Up-regulated Genes with known functions only in Vd-X at early stages of interaction
| Code | Gene ID | Enzyme name | FPKM value | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CK | VdX6 | VdX12 | VdZ6 | VdZ12 | VdH6 | VdH12 | VdW6 | VdW12 | |||
| 1 | VDAG_01555 | Alpha-glucosidase | 0.525139 | 1.351249 | 0.631004 | 0.605564 | 0.620046 | 0.590879 | 0.45985 | 0.402997 | 0.450216 |
| 2 | VDAG_01866 | Xylosidase/arabinosidase | 2.999633 | 6.737425 | 3.158829 | 3.239391 | 2.54392 | 3.426193 | 2.85372 | 2.522221 | 2.049945 |
| 3 | VDAG_03038 | Trehalase | 4.037018 | 10.34559 | 4.171279 | 3.328726 | 3.723864 | 3.169099 | 3.525587 | 2.688863 | 2.205004 |
| 4 | VDAG_03553 | Alpha-N-arabinofuranosidase | 2.017713 | 2.840681 | 4.043869 | 3.204145 | 2.274602 | 3.487533 | 2.467085 | 2.319605 | 1.751206 |
| 5 | VDAG_03526 | Alpha-glucuronidase | 3.077552 | 7.649031 | 3.025971 | 2.906985 | 3.357615 | 3.521792 | 2.073764 | 2.32711 | 2.3016 |
| 6 | VDAG_03790 | Endo-1,4-beta-xylanase | 0.988496 | 3.303921 | 1.049834 | 0.937063 | 0.564055 | 0.872658 | 0.73547 | 0.559991 | 0.670659 |
| 7 | VDAG_06165 | Endo-1,4-beta-xylanase | 0.808652 | 1.606539 | 1.930602 | 1.213314 | 1.249954 | 1.229588 | 1.647082 | 0.870066 | 1.601574 |
| 8 | VDAG_07983 | Mixed-linked glucanase | 2.264495 | 5.11995 | 2.258442 | 2.232694 | 2.349181 | 1.691225 | 0.893242 | 1.840287 | 1.631545 |
| 9 | VDAG_09516 | Glucanase | 0.565726 | 1.419057 | 0.616539 | 0.766083 | 1.168563 | 0.644183 | 0.590824 | 0.426934 | 0.643502 |
| 10 | VDAG_01193 | High-affinity nicotinic acid transporter | 0.922962 | 4.474884 | 2.389495 | 1.367505 | 2.293024 | 1.158877 | 1.052356 | 1.003427 | 0.855293 |
| 11 | VDAG_02089 | Quinate permease | 0.246652 | 1.239759 | 0.27095 | 0.039896 | 0.305545 | 0.133467 | 0.052949 | 0.090075 | 0 |
| 12 | VDAG_02826 | Voltage-gated potassium channel subunit beta-1 | 0.52636 | 1.770148 | 1.55752 | 0.539201 | 0.500666 | 0.471194 | 0.446343 | 0.28894 | 0.387249 |
| 13 | VDAG_03714 | Sugar transporter | 0 | 0.329793 | 0.192273 | 0.038948 | 0.105726 | 0.067001 | 0.051691 | 0.087935 | 0.148554 |
| 14 | VDAG_04513 | Hexose transporter protein | 2.194243 | 6.031784 | 2.31866 | 2.734094 | 2.48747 | 2.407533 | 1.509354 | 1.42593 | 1.515528 |
| 15 | VDAG_05125 | Oligopeptide transporter 1 | 0.10654 | 0.48534 | 0.340637 | 0.244306 | 0.11979 | 0.146367 | 0.035656 | 0.11036 | 0.100641 |
| 16 | VDAG_06060 | Oligopeptide transporter 2 | 1.273316 | 3.507472 | 1.424591 | 1.091823 | 1.400967 | 1.407274 | 0.863739 | 0.954953 | 0.987525 |
| 17 | VDAG_07141 | H+/hexose cotransporter 1 | 1.174547 | 3.193565 | 2.110352 | 1.578545 | 2.020917 | 2.37435 | 1.543719 | 1.33677 | 1.028067 |
| 18 | VDAG_07563 | Sugar transporter STL1 | 3.617449 | 23.46294 | 4.627167 | 4.448156 | 3.630124 | 4.030519 | 3.522212 | 2.785485 | 1.485532 |
| 19 | VDAG_08086 | Vitamin H transporter 1 | 1.611487 | 2.873923 | 3.84332 | 1.865509 | 3.010686 | 2.468418 | 1.583815 | 1.710399 | 2.150159 |
| 20 | VDAG_09088 | MFS transporter | 0.338652 | 3.60446 | 0.393707 | 0.739129 | 0.402541 | 0.835313 | 0.099841 | 1.023219 | 0.125486 |
| 21 | VDAG_09121 | Maltose permease MAL31 | 2.060967 | 3.647271 | 3.112186 | 2.227495 | 2.585063 | 3.214763 | 2.716028 | 2.03735 | 2.722908 |
| 22 | VDAG_09734 | Major myo-inositol transporter iolT | 8.604817 | 27.04882 | 11.02109 | 8.86173 | 9.040651 | 10.25533 | 5.441678 | 7.247084 | 5.418201 |
| 23 | VDAG_00798 | Calphotin | 2.4298 | 4.795505 | 3.519256 | 3.892562 | 3.226339 | 4.260004 | 3.460753 | 2.902065 | 2.982781 |
| 24 | VDAG_01176 | 4-coumarate-CoA ligase | 0.286 | 1.403583 | 0.44009 | 0.381114 | 0.556027 | 0.320558 | 0.53875 | 0.105766 | 0.323503 |
| 25 | VDAG_01341 | Methylitaconate delta2-delta3-isomerase | 0.899946 | 1.132172 | 2.138507 | 1.664966 | 1.364732 | 2.236922 | 1.509204 | 1.611162 | 1.286028 |
| 26 | VDAG_01782 | Pectinesterase family protein | 4.733987 | 9.575896 | 5.053127 | 6.412238 | 6.100081 | 6.127981 | 5.954252 | 4.959662 | 6.786958 |
| 27 | VDAG_01783 | Modification methylase Sau96I | 0.081859 | 0.188908 | 0.307139 | 0.230715 | 0.074369 | 0.265676 | 0.115725 | 0.059275 | 0.191795 |
| 28 | VDAG_01869 | Taurine catabolism dioxygenase TauD | 10.85428 | 19.91771 | 15.68955 | 17.54684 | 14.0093 | 16.81377 | 17.27372 | 13.04782 | 16.37882 |
| 29 | VDAG_01837 | Metallo-beta-lactamase superfamily protein | 0.716978 | 2.102556 | 2.371603 | 1.81465 | 1.748865 | 1.727576 | 0.957063 | 1.388916 | 1.043824 |
| 30 | VDAG_03354 | Pectate lyase | 0.259957 | 0.618515 | 1.255778 | 0.930004 | 0.591007 | 0.526287 | 0.19059 | 0.121278 | 0.308629 |
| 31 | VDAG_03792 | Beta-fructofuranosidase | 1.417489 | 5.825462 | 1.214082 | 1.161383 | 1.005343 | 1.333573 | 0.668952 | 0.822075 | 0.921293 |
| 32 | VDAG_03800 | Phosphate transporter | 1.066441 | 0.959226 | 2.010011 | 1.410633 | 1.683093 | 1.10869 | 1.149276 | 1.183568 | 0.876848 |
| 33 | VDAG_03894 | Lipase | 0.079272 | 0.063231 | 0.623916 | 0.415827 | 0.091218 | 0.167024 | 0.219462 | 0.179133 | 0.25405 |
| 34 | VDAG_03891 | Acetamidase | 2.501319 | 6.074764 | 4.124551 | 3.080263 | 3.894677 | 2.879871 | 1.776109 | 1.402326 | 2.302258 |
| 35 | VDAG_03941 | Regulatory protein alcR | 0.474947 | 2.525426 | 0.864933 | 1.051024 | 0.812903 | 0.673834 | 0.263023 | 0.168962 | 0.879413 |
| 36 | VDAG_03970 | 4-trimethylaminobutyraldehyde dehydrogenase | 1.11673 | 4.961036 | 1.515747 | 1.065759 | 1.558865 | 0.886226 | 0.667051 | 0.311335 | 0.77097 |
| 37 | VDAG_04175 | SAM and PH domain-containing protein | 2.508312 | 4.896892 | 2.096234 | 2.206801 | 2.672685 | 2.29161 | 2.247836 | 2.221988 | 1.767456 |
| 38 | VDAG_04685 | AdhA | 0 | 0.749311 | 0.363623 | 0.132737 | 0.418209 | 0.139558 | 0 | 0.184184 | 0 |
| 39 | VDAG_04961 | Aldehyde dehydrogenase | 0.304878 | 0.985035 | 0.491127 | 0.246694 | 0.251239 | 0.381107 | 0.500614 | 0.036883 | 0.037001 |
| 40 | VDAG_05050 | Choline monooxygenase | 1.342722 | 1.170244 | 3.332128 | 1.062762 | 0.474455 | 0.697089 | 0.450456 | 0.508567 | 0.251975 |
| 41 | VDAG_05135 | Carboxypeptidase S1 | 0 | 0.199664 | 0.217901 | 0.076268 | 0.038868 | 0.179948 | 0 | 0.046469 | 0.064716 |
| 42 | VDAG_05297 | 3-alpha-(Or 20-beta)-hydroxysteroid dehydrogenase | 0.502718 | 0.859157 | 1.524476 | 1.118018 | 1.276975 | 0.544056 | 0.668099 | 1.077308 | 0.380073 |
| 43 | VDAG_05324 | 3-alpha-(Or 20-beta)-hydroxysteroid dehydrogenase | 0.424632 | 2.728921 | 0.853371 | 0.702873 | 0.806426 | 0.900467 | 0.35943 | 0.584218 | 0.73203 |
| 44 | VDAG_05455 | Gamma-glutamyltranspeptidase | 8.097854 | 14.62289 | 7.23067 | 6.837455 | 10.22524 | 8.804363 | 7.083837 | 7.027691 | 7.604183 |
| 45 | VDAG_05780 | Long-chain-alcohol oxidase | 12.20917 | 23.38509 | 13.18572 | 13.34187 | 11.49875 | 13.68543 | 9.477272 | 10.87106 | 12.46451 |
| 46 | VDAG_06126 | Secreted protein | 0.396382 | 2.540219 | 0.349184 | 0.221178 | 0.522292 | 0.419048 | 0.331605 | 0.146586 | 0.504571 |
| 47 | VDAG_06334 | Sodium/bile acid cotransporter 7-A | 5.975553 | 10.44867 | 6.986222 | 7.134331 | 6.986681 | 5.925724 | 5.77749 | 6.149932 | 6.790046 |
| 48 | VDAG_06756 | Aldo-keto reductase yakc | 0 | 0.064868 | 0.430866 | 0.068946 | 0 | 0.085674 | 0.06682 | 0 | 0 |
| 49 | VDAG_06997 | Epoxide hydrolase | 0 | 0.343647 | 0.057084 | 0.180036 | 0.229805 | 0.229429 | 0.137809 | 0 | 0 |
| 50 | VDAG_07057 | Acetyl-coenzyme A synthetase | 23.07698 | 71.91837 | 28.53978 | 25.50788 | 23.87777 | 25.41201 | 15.28279 | 11.00477 | 13.18577 |
| 51 | VDAG_07158 | ECM14 protein | 1.312533 | 1.658648 | 2.765504 | 2.456603 | 2.03252 | 1.488009 | 0.944383 | 1.82507 | 1.283626 |
| 52 | VDAG_07166 | Carnitine O-palmitoyltransferase I | 17.12393 | 31.32699 | 17.35379 | 13.93265 | 19.8167 | 20.48912 | 14.99808 | 12.56235 | 12.11036 |
| 53 | VDAG_07544 | Non-specific lipid-transfer protein | 7.073779 | 14.02016 | 9.853166 | 11.52067 | 6.789217 | 7.23411 | 6.939248 | 6.207376 | 5.102574 |
| 54 | VDAG_07681 | ATP-binding cassette sub-family G member 5 | 0.280493 | 3.096587 | 0.36107 | 0.502172 | 0.490947 | 0.426678 | 0.394345 | 0.556072 | 0.142852 |
| 55 | VDAG_07728 | Adenine deaminase | 0.871341 | 0.730222 | 1.862647 | 1.335189 | 0.613871 | 0.842805 | 0.83656 | 1.780561 | 0.44741 |
| 56 | VDAG_07980 | Peptide hydrolase | 4.547497 | 11.54846 | 6.580591 | 4.869931 | 5.140242 | 5.641155 | 3.053364 | 4.299607 | 2.724793 |
| 57 | VDAG_08067 | Pectate lyase B | 1.597656 | 3.549548 | 2.364415 | 2.864407 | 2.737817 | 2.960574 | 1.770214 | 2.357985 | 1.326954 |
| 58 | VDAG_08286 | Alpha-glucosides permease MPH2/3 | 3.761419 | 10.00247 | 2.846449 | 3.855032 | 2.85363 | 4.066861 | 2.265101 | 2.82029 | 0.99225 |
| 59 | VDAG_08654 | Acetyl-coenzyme A synthetase | 6.311482 | 25.47375 | 11.4497 | 7.045619 | 9.681632 | 9.402415 | 4.885708 | 5.435872 | 4.019251 |
| 60 | VDAG_08703 | Alpha-1,2 mannosyltransferase KTR1 | 0.115893 | 0.332317 | 0.996546 | 0.726013 | 0.607646 | 0.444118 | 0.773915 | 0.233683 | 0.497122 |
| 61 | VDAG_09082 | Succinyl-CoA:3-ketoacid-coenzyme A transferase | 4.461569 | 15.45278 | 8.700468 | 11.87125 | 6.812786 | 6.795712 | 2.9958 | 3.117604 | 3.772685 |
| 62 | VDAG_09253 | Sulfate transporter | 0.621583 | 1.003273 | 1.925273 | 0.996173 | 0.614154 | 0.592044 | 0.590546 | 0.211895 | 0.651484 |
| 63 | VDAG_09313 | Alpha-ketoglutarate-dependent sulfonate dioxygenase | 1.120543 | 1.596103 | 2.703301 | 1.520719 | 1.336662 | 2.082727 | 1.975342 | 1.398853 | 2.107069 |
| 64 | VDAG_09583 | Alcohol oxidase | 0.0371 | 0.946964 | 0.029918 | 0.166105 | 0.170765 | 0.201409 | 0.030483 | 0.029096 | 0 |
| 65 | VDAG_09712 | Succinate/fumarate mitochondrial transporter | 14.67152 | 66.4187 | 23.3401 | 11.31978 | 19.52469 | 18.52314 | 4.75121 | 5.791921 | 6.018953 |
| 66 | VDAG_09813 | C6 transcription factor RegA | 0.355193 | 1.301947 | 0.457038 | 0.47428 | 0.543437 | 0.50541 | 0.322972 | 0.266267 | 0.23939 |
| 67 | VDAG_10171 | Fungal specific transcription factor domain-containing protein | 1.890601 | 3.353588 | 3.570153 | 2.624426 | 2.242321 | 2.5453 | 1.963163 | 2.84132 | 2.766448 |
| 68 | VDAG_10443 | Rhamnogalacturonan lyase | 2.396504 | 4.665757 | 2.848467 | 2.509498 | 2.189874 | 2.620633 | 1.958417 | 2.44632 | 1.750408 |