KEY RESOURCES TABLE
| Reagent or Resource | Source | Identifier |
|---|---|---|
| Chemicals | ||
| Cystain UV Precise P buffer | Sysmex | Catalogue number: 05-5002 |
| DAPI (4′,6-diamidino-2-phenylindole) | ThermoFisher Scientific | Catalogue number: D1306 |
| Safranin-O | Sigma-Aldrich | Catalogue number: S2255-25G |
| Fast-Green | Sigma-Aldrich | Catalogue number: F7252-5G |
| Critical commercial assays | ||
| Genejet extraction kit | ThermoFisher Scientific | Catalogue number: K0691 |
| Nextra library kit | Illumina | Catalogue number: FC-131-1024 |
| Deposited data | ||
| Phenotypic data from common garden study | This paper; [66] | https://doi.org/10.5061/dryad.881j0ds |
| Raw crossing survey data | This paper | https://doi.org/10.5061/dryad.cz8w9ghzr |
| Re-sequence genomes | This paper; [78] | NCBI SRA (https://www.ncbi.nlm.nih.gov/sra), BioProject ID PRJNA574603 |
| Experimental models | ||
| Mimulus seeds | Seeds collected by JMC, or generously given to JMC by former members of the Willis lab | N/A |
| Software and algorithms | ||
| TrimGalore! | [83] | https://www.bioinformatics.babraham.ac.uk/projects/trim_galore/ |
| BWA | [84] | http://bio-bwa.sourceforge.net/ |
| GATK | [86] | https://software.broadinstitute.org/gatk/ |
| VCFTools | [87] | http://vcftools.sourceforge.net/ |
| ANGSD | [91] | http://www.popgen.dk/angsd/index.php/ANGSD |
| Genome Tools | Python scripts provided by Simon Martin | http://github.com/simonhmartin/genomics_general |
| R: ape | [89] | N/A |
| R: phangorn | [90] | N/A |
| R: lme4 | [93] | N/A |
| R: car | [94] | N/A |
| Stacks | [88] | http://catchenlab.life.illinois.edu/stacks/ |