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. 2020 Feb 13;10:2588. doi: 10.1038/s41598-020-59518-x

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© The Author(s) 2020

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Viral genome assembly and SNP analyses for three SPFMV isolates and three SPVC isolates and mutation analyses of 12 virus genomes. Genome organization of assembled virus genome, mapping results of sequence reads on the assembled virus genome, and positions of identified SNPs for SPFMV isolate IC (a), SPVC isolate GS (b) SPFMV isolate YJ (c), SPVC isolate IC (d), SPFMV isolate YJ-B (e), and SPVC isolate IS (f) were visualized. Number of identified SNPs (g) and frequency of SNPs for the 12 virus genomes. Based on assembled virus-associated contigs and mapping of sequence reads on the reference virus genome, viral genomes were obtained. Positions of individual ORFs were indicated. In addition, mapping results on the assembled individual virus genome were used for SNP identification. The positions of identified SNPs in each virus genome were visualized by the Tablet program.