Table 6.
Information of virus-associated reads for viruses identified in sweet potato in Korea.
| Index | Abbreviation | GJ | GS | HN | IC | IS | NS | YA | YJ | YJ-B | YJ-H |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | SPCFV | 16 | |||||||||
| 2 | SPFMV | 60 | 191 | 26392 | 2020 | 1902 | 13046 | 104115 | 50932 | ||
| 3 | SPLV | 3359 | 1582 | 6365 | |||||||
| 4 | SPLCV | 34027 | 4580 | 167 | 1518 | 4358 | 22140 | 17575 | |||
| 5 | SPV2 | 3684 | 434 | 186 | 1737 | 5122 | |||||
| 6 | SPVC | 1022 | 130595 | 1284 | 10400 | 2332 | 29625 | 27717 | |||
| 7 | SPVG | 841 | 4109 | 16331 | 317 | 3520 | |||||
| 8 | SPSMV | 59 | 332 | 19 | 141 | 61 | 80 | 191 | 63 | 187 | |
| 9 | SPVF | 667 | 292 | ||||||||
| 10 | SPVE | 129306 | 49226 |
To calculate the number of virus-associated reads, raw sequence reads were mapped on the identified virus genome using the BBMap program.