Table 2.
Examples of novel viruses found in farm animals by available mNGS studies.
| Farm Animal Type | Novel Viruses Found by mNGS Studies | References |
|---|---|---|
| Cattle | Astrovirus | [109] |
| CRESS-DNA virus | [50] | |
| Hepacivirus | [110] | |
| Nidovirus | [52] | |
| Papillomavirus | [111] | |
| Parvovirus | [112] | |
| Picornavirus | [113] | |
| Orthobunyavirus | [114] | |
| Rotavirus | [115] | |
| Small ruminants | Astrovirus | [116,117] |
| Poultry | Coronavirus | [118] |
| Picobirnavirus | [42,119] | |
| Picornavirus | [120,121] | |
| Pigs | Astrovirus | [122,123] |
| Bocavirus/Bocavirus-like | [98,122,124] | |
| Bufavirus | [125] | |
| Circovirus/Circovirus-like | [40,104,126] | |
| Enterovirus/Enterovirus-like | [85,89,92,93] | |
| Immunodeficiency-associated stool virus | [127] | |
| Ljungan-like viruses | [122] | |
| Parvovirus | [128,129] | |
| Porcine stool-associated circular virus | [82] | |
| Posavirus | [100] | |
| Pestivirus | [41,130] | |
| Picornavirus | [131] | |
| Picornavirales | [132] | |
| Teschovirus/Teschovirus-like | [90] |