Table 1.
The samples and the corresponding viral hits including virus type, gene and size of the retrieved fragment utilized here.
| Sample Name | Animal Species | Organ | Origin | Virus | Gene | Fragment Size (nt) | Accession Number |
|---|---|---|---|---|---|---|---|
| UKMa1 | Microtus agrestis | Intestine | UK | Rotavirus A | VP1 (partial) | 2145 | MN626437 |
| UKMa1 | Microtus agrestis | Intestine | UK | Rotavirus A | VP2 (partial) | 987 | MN626438 |
| UKMa1 | Microtus agrestis | Intestine | UK | Rotavirus A | VP3 (partial) | 2306 | MN626439 |
| UKMa1 | Microtus agrestis | Intestine | UK | Rotavirus A | VP6 (partial) | 878 | MN626440 |
| UKMa1 | Microtus agrestis | Intestine | UK | Rotavirus A | NSP2 (partial) | 900 | MN626435 |
| UKMa1 | Microtus agrestis | Intestine | UK | Rotavirus A | NSP3 (partial) | 349 | MN626436 |
| UKMa1 | Microtus agrestis | Intestine | UK | Astrovirus | ORF1a (partial) | 1728 | MN626433 |
| UKMa1 | Microtus agrestis | Intestine | UK | Astrovirus | ORF1b (partial) | 1554 | MN626434 |
| UKMa1 | Microtus agrestis | Intestine | UK | Astrovirus | Capsid (partial) | 1052 | MN626432 |
| UKMa K4D | Microtus agrestis | Kidney | UK | Paramyxovirus | L (partial) | 2731 | MN626428 |
| UKMa K4D | Microtus agrestis | Kidney | UK | Paramyxovirus | H (partial) | 615 | MN626427 |
| UKMa K4D | Microtus agrestis | Kidney | UK | Paramyxovirus | F (partial) | 726 | MN626426 |
| UKMa K4D | Microtus agrestis | Kidney | UK | Paramyxovirus | M (partial) | 760 | MN626429 |
| UKMa K4D | Microtus agrestis | Kidney | UK | Paramyxovirus | P (partial) | 856 | MN626431 |
| UKMa K4D | Microtus agrestis | Kidney | UK | Paramyxovirus | N (partial) | 1046 | MN626430 |
| L232 | Oryctolagus cuniculus | Intestinal wash | FR | Rotavirus A | VP1 (partial) | 3268 | MN626420 |
| L232 | Oryctolagus cuniculus | Intestinal wash | FR | Rotavirus A | VP2 (partial) | 2645 | MN626424 |
| L232 | Oryctolagus cuniculus | Intestinal wash | FR | Rotavirus A | VP3 (partial) | 2536 | MN626421 |
| L232 | Oryctolagus cuniculus | Intestinal wash | FR | Rotavirus A | VP6 (partial) | 1336 | MN626422 |
| L232 | Oryctolagus cuniculus | Intestinal wash | FR | Rotavirus A | VP7 (partial) | 978 | MN626423 |
| L232 | Oryctolagus cuniculus | Intestinal wash | FR | Rotavirus A | NSP2 (partial) | 980 | MN626417 |
| L232 | Oryctolagus cuniculus | Intestinal wash | FR | Rotavirus A | NSP3 (partial) | 951 | MN626418 |
| L232 | Oryctolagus cuniculus | Intestinal wash | FR | Rotavirus A | NSP4 (partial) | 584 | MN626419 |
| L232 | Oryctolagus cuniculus | Intestinal wash | FR | Picorna-like virus | Non-structural polyprotein (partial) | 890 | MN626416 |
| L232 | Oryctolagus cuniculus | Intestinal wash | FR | Picorna-like virus | Non-structural polyprotein contig 2 (partial) | 2187 | MN626416 |
| L232 | Oryctolagus cuniculus | Intestinal wash | FR | Picorna-like virus | Structural polyprotein (partial) | 2349 | MN626416 |
| L232 | Oryctolagus cuniculus | Intestinal wash | FR | Sobemovirus | Polyprotein P2ab (partial) | 1653 | MN626425 |
| L232 | Oryctolagus cuniculus | Intestinal wash | FR | Luteovirus | Peptidase (partial) | 2067 | MN626414 |
| L232 | Oryctolagus cuniculus | Intestinal wash | FR | Luteovirus | RdRp (partial) | 1269 | MN626413 |
| L232 | Oryctolagus cuniculus | Intestinal wash | FR | Luteovirus | Coat protein (partial) | 573 | MN626415 |