Table 1.
Differentially expressed genes in dsc1–1 and wrky19–1 at 7 days post inoculation with M. incognita
| Gene ID | Significance | Relative expression | Gene description | WRKY domain in promotor | Associated with |
|---|---|---|---|---|---|
| Regulated in dsc1–1 | |||||
| AT4G12010 | 10.71 | −2.50 | Dominant suppressor of CAMTA3 1 (DSC1) | N | Biotic stress response [28] |
| AT1G28040 | 7.55 | −0.07 | Ring/U-box superfamily protein | – | Putative ubiquitin ligase |
| AT2G38380 | 7.08 | −0.12 | Peroxidase superfamily protein | Y | Abiotic stress response [30] |
| AT4G16745 | 6.62 | −0.29 | Exostosin family protein | N | Pollen germination [31] |
| AT1G70360 | 6.54 | − 0.05 | F-box family protein | N | Putative ubiquitin ligase |
| AT5G57655 | 6.50 | 0.08 | Xylose isomerase family protein | N | Recovery from abiotic stress [32] |
| AT3G52970 | 5.21 | −0.36 | Cytochrome P450, family 76, subfamily G, polypeptide 1 | Y | |
| AT5G06905 | 4.46 | −0.44 | Cytochrome P450, family 93, subfamily D peptide 1 | Y | Putative oxygen-binding activity |
| AT4G29690 | 4.41 | −0.56 | Alkaline-phosphatase-like family protein | Y | Hormone signaling and responses [33] |
| AT1G68040 | 4.22 | −0.35 | S-adenosyl-L-methionine-dependent methyltransferase superfamily protein | N | Defense [34] |
| AT5G06900 | 4.21 | − 0.44 | Cytochrome P450, family 712, subfamily A polypeptide 2 | Y | Putative oxygen-binding activity |
| AT1G56280 | 3.72 | 0.32 | drought-induced 19 (Di19) | N | Abiotic stress response [35] |
| Regulated in wrky19–1 | |||||
| AT2G38330 | 9.00 | 0.18 | Mate Efflux family protein | Y | Biotic stress response [36] |
| AT5G51860 | 8.53 | 0.09 | K-box and MADS box transcription factor family protein (AGL72) | Y | Cell differentiation [37] |
| AT5G45380 | 8.41 | −0.09 | DEGRADATION OF UREA 3 (DUR3) | Y | Urea uptake [38] |
| AT1G34320 | 8.11 | − 0.18 | PSK SIMULATOR 1 (PSI1) | Y | Cell growth [39] |
| AT5G14470 | 7.96 | −0.19 | Galactokinase 2 (GALK2) | Y | Abiotic stress response [40] |
| AT1G64790 | 2.84 | 1.19 | ILITHYIA (ILA) | Y | Biotic stress [41] |
| AT1G66870 | 2.80 | 0.62 | Carbohydrate-binding X8 domain superfamily protein | Y | |
| AT3G48740 | 2.71 | 0.57 | Sugars Will Eventually be Exported Transporter 11 (SWEET11) | Y | Biotic stress [42] |
| AT3G27940 | 3.13 | 0.54 | LOB domain containing protein 26 (LBD26) | Y | Leaf development [43] |
| AT5G23660 | 2.77 | 0.53 | Sugars Will Eventually be Exported Transporter 12 (SWEET 12) | N | Biotic stress [42] |
| AT4G26010 | 3.68 | −0.73 | Peroxidase super family protein | Y | Abiotic stress [44] |
| AT5G38910 | 3.34 | −0.74 | RmLC-like cupins superfamily protein | Y | Abiotic stress response [45] |
| AT3G47340 | 3.28 | − 0.71 | glutamine-dependent asparagine synthase 1 (ASN1) | Y | Metabolic pathways [46] |
| AT5G08250 | 3.09 | −0.76 | Cytochrome P450 superfamily protein | N | |
| At1G34510 | 3.09 | −0.66 | Peroxidase superfamily protein | Y | Wound response [47] |
Gene expression of dsc1–1 and wrky19–1 is compared to Col-0. For each gene the level of significance and relative expression is stated, and the presence of a WRKY domain in the promotor region. The genes regulated in dsc1–1 are ranked based on significance, whereas genes regulated in wrky19–1 are presented in the following order: first the 5 most significant genes followed by the 5 genes most up-regulated and next, the 5 genes which are most down-regulated