Table 1.
Sample information.
| Case | Sample | Timepoint | Description | HCV RNAa | serum ALTb | # of HCV clonesc | # of haplotype codes |
|---|---|---|---|---|---|---|---|
| #1 | #1-DCV/ASV-pre | 1 | before DCV/ASV | 6.6 | 43 | 337 | 6 |
| #1-DCV/ASV-post | 2 | after DCV/ASV | 5.2 | 28 | 6,949 | 13 | |
| #2 | #2-DCV/ASV-pre | 1 | before DCV/ASV | 6.6 | 33 | 8,599 | 52 |
| #2-DCV/ASV-post | 2 | after DCV/ASV | 5 | 32 | 257 | 5 | |
| #3 | #3-DCV/ASV-pre | 1 | before DCV/ASV | 5.5 | 29 | 5,583 | 23 |
| #3-DCV/ASV-post | 2 | after DCV/ASV | 4.8 | 26 | 142 | 5 | |
| #4 | #4-DCV/ASV-pre | 1 | before DCV/ASV | 5.4 | 42 | 1,469 | 21 |
| #4-DCV/ASV-post | 2 | after DCV/ASV | 5.2 | 25 | 12,525 | 11 | |
| #5 | #5-DCV/ASV-pre | 1 | before DCV/ASV | 7.1 | 13 | 10,854 | 32 |
| #5-DCV/ASV-post | 2 | after DCV/ASV | 6.2 | 14 | 7,743 | 12 | |
| #6 | #6-DCV/ASV-pre | 1 | before DCV/ASV | 6.1 | 30 | 1,850 | 26 |
| #6-DCV/ASV-post | 2 | after DCV/ASV | 5.8 | 24 | 4,117 | 8 | |
| #7 | #7-DCV/ASV-pre | 1 | before DCV/ASV | 6.2 | 65 | 2,273 | 49 |
| #7-DCV/ASV-post | 2 | after DCV/ASV | 5.5 | 31 | 5,429 | 11 | |
| #8 | #8-DCV/ASV-pre | 1 | before DCV/ASV | 6.3 | 81 | 3,954 | 39 |
| #8-DCV/ASV-post | 2 | after DCV/ASV | 3.8 | 20 | 340 | 6 | |
| #9 | #9-SMV-pre | 1 | before SMV/PegIFN/RBV | 7.8 | 119 | 6,257 | 15 |
| #9-SMV-post | 2 | after SMV/PegIFN/RBV | 4.5 | 9 | 3,678 | 10 | |
| #9-DCV/ASV-pre | 3 | before DCV/ASV | 7.2 | 76 | 5,454 | 35 | |
| #9-DCV/ASV-post | 4 | after DCV/ASV | 4.7 | 21 | 9,917 | 12 | |
| #9-SOF/LDV-pre | 5 | before SOF/LDV | 7.8< | 136 | 8,556 | 24 | |
| #10 | #10-SMV-pre | 1 | before SMV/PegIFN/RBV | 6.8 | 55 | 6,923 | 17 |
| #10-SMV-post | 2 | after SMV/PegIFN/RBV | 6.6 | 28 | 7,065 | 18 | |
| #10-DCV/ASV-pre | 3 | before DCV/ASV | 6.2 | 81 | 7,184 | 13 | |
| #10-DCV/ASV-post | 4 | after DCV/ASV | 3.5 | 16 | 9,942 | 12 | |
| #10-SOF/LDV-pre | 5 | before SOF/LDV | 5.9 | 52 | 11,858 | 12 | |
| #11 | #11-SMV-pre | 1 | before SMV/PegIFN/RBV | 6.9 | 66 | 2,763 | 10 |
| #11-DCV/ASV-pre | 2 | before DCV/ASV | 5.7 | 18 | 6,285 | 15 | |
| #11-DCV/ASV-post | 3 | after DCV/ASV | 7.2 | 89 | 1,645 | 6 | |
| #11-SOF/LDV-pre | 4 | before SOF/LDV | 6.3 | 66 | 1,499 | 53 | |
| #12 | #12-SMV-pre | 1 | before SMV/PegIFN/RBV | 7.6 | 38 | 7,235 | 25 |
| #12-SMV-post | 2 | after SMV/PegIFN/RBV | 7.6 | 31 | 7,273 | 73 | |
| #12-DCV/ASV-pre | 3 | before DCV/ASV | 7.2 | 50 | 6,506 | 92 | |
| #12-DCV/ASV-post | 4 | after DCV/ASV | 7.4 | 17 | 628 | 30 | |
| #12-SOF/LDV-pre | 5 | before SOF/LDV | 7 | 31 | 4,450 | 58 |
DCV, daclatasvir; ASV, asunaprevir; SMV, simeprevir; PegIFN, peginterferon; RBV, ribavirin; SOF, sofosbuvir; LDV, ledipasvir; alogIU/mL; bU/L; cThe number of CCS2 reads except for the same sequences as other reads in comparing CCS2 reads in sample each other by blastn.