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. 2019 Dec 31;133(3):951–966. doi: 10.1007/s00122-019-03519-6

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© The Author(s) 2019

Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 4 — Species taxonomy based on a Hawkes (1990) and b Spooner et al. (2007) classifications. c The phylogenetic tree based on the CNV status of the genes (this study, the same data as used for the PCA). Similar to the PCA plot, CUR, JUZ and AJH genomes cluster closer and they cluster closer to the wild COM genome compared to the other genomes. Moreover, the other wild genome, BUK, is more distant than the other genomes. M6 and TBR genomes are close, while CHA is close to the GON1, GON2, PHU, STN ADG1 and ADG2 cluster