Table 1.
Sample | Raw Reads | Raw Bases | %≥Q30 | Clean Reads | Clean Bases | Mapped-Reads | Mapped Rate (%) | GC(%) | %≥Q30 | Error(%) |
---|---|---|---|---|---|---|---|---|---|---|
MC1-CK-1 | 13,471,728 | 2,020,759,200 | 91.21 | 11,691,054 | 1,726,157,998 | 10,887,922 | 93.13 | 56.93 | 93.90 | 0.0137 |
MC1-CK-2 | 15,215,384 | 2,282,307,600 | 91.1 | 12,979,384 | 1,912,783,427 | 11,812,868 | 91.01 | 56.67 | 93.81 | 0.0138 |
MC1-CK-3 | 16,388,692 | 2,458,303,800 | 91.5 | 14,177,492 | 2,094,489,027 | 13,124,998 | 92.58 | 56.44 | 94.01 | 0.0136 |
MC1-1 | 13,820,672 | 2,073,100,800 | 94.9 | 12,093,922 | 1,783,589,346 | 10,993,370 | 90.90 | 55.94 | 96.86 | 0.0109 |
MC1-2 | 16,604,690 | 2,490,703,500 | 93.72 | 14,554,380 | 2,145,906,752 | 12,859,768 | 88.36 | 56.12 | 96.07 | 0.0115 |
MC1-3 | 16,857,140 | 2,528,571,000 | 93.64 | 14,246,340 | 2,090,108,492 | 12,558,154 | 88.15 | 55.82 | 96.07 | 0.0115 |