Table 3.
KEGG pathways differentially regulated between wild-type and ridA S. enterica.
| Pathway Description | 1 Relative Abundance | Differential Genes/Total Genes | p Value | FDR Value |
|---|---|---|---|---|
| Thiamine metabolism (stm00730) | ridA | 8/12 | 8.60 × 10−7 | 4.80 × 10−5 |
| Biotin metabolism (stm00780) | ridA | 6/14 | 6.60 × 10−4 | 1.20 × 10−2 |
| Biosynthesis of amino acids (stm01230) | ridA | 18/130 | 5.50 × 10−4 | 1.50 × 10−3 |
| One-carbon pool by folate (stm00670) | ridA | 5/13 | 4.40 × 10−3 | 4.90 × 10−2 |
| ABC transporters (stm02010) | ridA | 18/173 | 1.30 × 10−2 | 8.40 × 10−2 |
| Glycine, serine, and threonine metabolism (stm00260) | ridA | 7/35 | 1.10 × 10−2 | 8.70 × 10−2 |
| Flagellar assembly (stm02040) | WT | 31/37 | 3.00 × 10−28 | 1.40 × 10−26 |
| Ribosome (stm03010) | WT | 28/78 | 4.20 × 10−12 | 1.00 × 10−10 |
| Bacterial chemotaxis (stm02030) | WT | 11/23 | 3.60 × 10−6 | 5.70 × 10−5 |
| Bacterial invasion of epithelial cells (stm05100) | WT | 5/9 | 3.60 × 10−3 | 4.20 × 10−2 |
1 Relative abundance denotes the S. enterica strain (wild-type or ridA) where expression of genes in the corresponding pathway(s) is higher.