Table 2.
Gene symbol, name, sequence and size of the 20 genes measured in milk somatic cells.
| Gene | Name | Sequence | Bp (Size) | Ref. |
|---|---|---|---|---|
| ACACA | Acetyl-CoA carboxylase alfa | F: 3709 CATCTTGTCCGAAACGTCGAT R: 3809 CCCTTCGAACATACACCTCCA |
101 | B |
| ACSL1 | Acyl-CoA Synthetase Long Chain Family Member 1 | F.1929 GTGGGCTCCTTTGAAGAACTGT R.2048 ATAGATGCCTTTGACCTGTTCAAAT |
120 | A |
| ACSS2 | Acyl-CoA Synthetase Short Chain Family Member 2 | F. 1871 GGCGAATGCCTCTACTGCTT R. 1970 GGCCAATCTTTTCTCTAATCTGCTT |
100 | B |
| PLIN2 (ADFP) | Adipose Differentiation-Related Protein | F. 161 TGGTCTCCTCGGCTTACATCA R. 241 TCATGCCCTTCTCTGCCATC |
81 | B |
| DGAT1 | Diacylglycerol O-acyltransferase Homolog 1 | F. 190 CCACTGGGACCTGAGGTGTC R. 290 GCATCACCACACACCAATTCA |
101 | B |
| DGAT2 | Diacylglycerol O-acyltransferase Homolog 2 | F: 389 CATGTACACATTCTGCACCGATT R: 488 TGACCTCCTGCCACCTTTCT |
100 | B |
| FABP3 | Fatty Acid Binding Protein 3 | F. 458 GAACTCGACTCCCAGCTTGAA R. 559 AAGCCTACCACAATCATCGAAG |
102 | A |
| FABP4 | Fatty Acid Binding Protein 4 | F: 401 TGGTGCTGGAATGTGTCATGA R: 501 TGGAGTTCGATGCAAACGTC |
101 | A |
| FADS2 | Fatty acid desaturase 2 | F. 642 AAAGGGTGCCTCTGCCAACT R. 742 ACACGTGCAGCATGTTCACA |
101 | B |
| FASN | Fatty acid synthase | F.6473 ACCTCGTGAAGGCTGTGACTCA R.6564 TGAGTCGAGGCCAAGGTCTGAA |
92 | B |
| FATP (SLC27A6) | Soluble Carrier Protein 27A | F: 861 GGCAAGGGCATGGATGATC R: 956 GCGGTAGTACCTGCTGTGCAC |
96 | A |
| INSIG1 | Insulin Induced Gene 1 | F. 523 AAAGTTAGCAGTCGCGTCGTC R. 630 TTGTGTGGCTCTCCAAGGTGA |
108 | C |
| LPIN1 | Lipin 1 | F. 147 TGGCCACCAGAATAAAGCATG R. 247 GCTGACGCTGGACAACAGG |
101 | A |
| LPL | Lipoprotein Lipase | F. 327 ACACAGCTGAGGACACTTGCC R. 427 GCCATGGATCACCACAAAGG |
101 | B |
| PPARG | Peroxisome Proliferator Activated Receptor Gamma | F. 135 CCAAATATCGGTGGGAGTCG R. 235 ACAGCGAAGGGCTCACTCTC |
101 | B |
| SCAP | SREBF Chaperone | F. 1188 CCATGTGCACTTCAAGGAGGA R. 1295 ATGTCGATCTTGCGTGTGGAG |
108 | C |
| SCD | Stearoyl-CoA desaturase | F. 809 TCCTGTTGTTGTGCTTCATCC R. 909 GGCATAACGGAATAAGGTGGC |
101 | A |
| SREBF1 | Sterol Regulatory Element Binding Transcription Factor | F. 2824 TGTCCACAAAAGCAAATCGC R. 2990 TGTCGACCACCTCTGGCTTC |
101 | A |
| THRSP | Thyroid Hormone Responsive | F. 631 CTACCTTCCTCTGAGCACCAGTTC R. 781 ACACACTGACCAGGTGACAGACA |
151 | C |
| VLDLR | Very Low Density Lipoprotein Receptor | F. 98 GCCCAGAACAGTGCCATATGA R. 200 TTTTCACCATCACACCGCC |
103 | B |
A = Bionaz and Loor, 2008a; B = Bionaz and Loor, 2008b; C = Harvatine and Bauman 2006.