Table 3.
List of detected ARGs in isolates.
| Gene | Drug class | Drug on panel | Number of E. | Number of E. | Validation (%) |
|---|---|---|---|---|---|
| faecium isolates | faecalis isolates | ||||
| aac(6)-aph(2) | Aminoglycoside | GEN, KAN | 3 (4) | 39 (41) | 93.4 |
| aph(2)-Id | Aminoglycoside | GEN, KAN | 8 (8) | 0 (0) | 100 |
| aph(3)-III | Aminoglycoside | KAN | 13 (13) | 38 (42) | 92.7 |
| aadD | Aminoglycoside | KAN | 1 (1) | 0 (0) | 100 |
| erm(A) | Macrolide | ERY TYL | 3 (3) | 0 (0) | 100 |
| erm(B) | Macrolide | ERY TYL | 27 (27) | 54 (55) | 98.8 |
| cat | Phenicol | CHL | 0 (0) | 17 (18) | 94.5 |
| cat(pC221) | Phenicol | CHL | 0 (0) | 4 (4) | 100 |
| cat(pC194) | Phenicol | CHL | 2 (2) | 0 (0) | 100 |
| vat(E) | Streptogramin | QDA | 20 (20) | 1 (1) | 100 |
| vat(D) | Streptogramin | QDA | 2 (2) | 0 (0) | 100 |
| lsa(A) | Streptogramin | QDA | 0 (0) | 96 (97) | 99 |
| tet(L) | Tetracycline | TET | 50 (50) | 53 (53) | 100 |
| tet(M) | Tetracycline | TET | 59 (59) | 69 (70) | 99.2 |
| tet(O) | Tetracycline | TET | 1 (1) | 1 (1) | 100 |
| tet(S) | Tetracycline | TET | 3 (3) | 1 (1) | 100 |
| gyrA (S84F) | Fluoroquinolone | CIP | 0 (0) | 1 (1) | 100 |
| pbp5 (E630V) | β-lactam | PEN | 3 (3) | 0 (0) | 100 |
| pbp5 (ins D467) | β-lactam | PEN | 1 (1) | 0 (0) | 100 |
| pbp5 (ins S467) | β-lactam | PEN | 3 (3) | 0 (0) | 100 |
| spc | Aminoglycoside | None | 3 (3) | 0 (0) | 100 |
| lnu(A) | Lincosamide | None | 0 (0) | 2 (2) | 100 |
| lnu(B) | Lincosamide | None | 38 (38) | 15 (15) | 100 |
| mph(B) | Macrolide | None | 1 (1) | 0 (0) | 100 |
| msr(C) | Macrolide | None | 85 (85) | 0 (0) | 100 |
| dfrD | Trimethoprim | None | 0 (0) | 1 (1) | 100 |
| dfrG | Trimethoprim | None | 0 (0) | 7 (7) | 100 |
| Total | 325 (327) | 400 (409) | 99.15 |
The numbers represent their prevalence within the analyzed dataset, that was established by sraX. In parentheses are shown the original values reported by Tyson et al. (2018b). For computing the confirmation rate, only those ARGs and SNPs which were coincidental in both studies were considered.
Bold character indicates the corroborated global average validation rate.