Table 3.
Annotation of candidate genes in the demarcated QTL regions identified through GWAS in hard winter wheat association mapping panel (HWWAMP).
| Chr | QTL | Gene ID a | Start position of the gene (bp) a | Gene Annotation |
|---|---|---|---|---|
| 2AS | QCL.sdsu-2AS | TraesCS2A02G025800 | 12,129,444 | 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like |
| TraesCS2A02G025900 | 12,139,588 | 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like | ||
| TraesCS2A02G026500 | 12,247,082 | 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like | ||
| TraesCS2A02G036900 | 15,756,318 | 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like | ||
| TraesCS2A02G037900 | 15,959,789 | 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like | ||
| TraesCS2A02G033900 | 15,011,079 | mannose/glucose-specific jacalin-like lectin | ||
| 2BS | QCL.sdsu-2BS | TraesCS2B02G009100 | 5,041,094 | cytochrome P450 87A3-like |
| TraesCS2B02G010100 | 5,628,213 | probable indole-3-pyruvate monooxygenase YUCCA5 | ||
| 2DS | QCL.sdsu-2DS | TraesCS2D02G012100 | 5,747,458 | probable indole-3-pyruvate monooxygenase YUCCA5 |
| TraesCS2D02G012800 | 6,204,775 | cytochrome P450 87A3 | ||
| TraesCS2D02G014400 | 7,062,903 | cytochrome P450 85A1 | ||
| TraesCS2D02G014500 | 7,072,238 | cytochrome P450 85A1 | ||
| TraesCS2D02G014600 | 7,085,341 | cytochrome P450 85A1 | ||
| TraesCS2D02G014700 | 7,089,687 | cytochrome P450 85A1 | ||
| 3BS | QCL.sdsu-3BS | TraesCS3B01G051000 | 25,906,973 | expansin |
| TraesCS3B01G051100 | 25,921,029 | expansin | ||
| TraesCS3B01G051200 | 26,043,431 | expansin | ||
| TraesCS3B01G051300 | 26,057,175 | expansin | ||
| TraesCS3B01G051400 | 26,191,126 | expansin | ||
| TraesCS3B01G051500 | 26,246,150 | expansin | ||
| TraesCS3B01G051600 | 26,301,286 | expansin | ||
| TraesCS3B01G051800 | 26,385,625 | expansin | ||
| TraesCS3B01G051900 | 26,399,446 | expansin | ||
| TraesCS3B01G052000 | 26,430,002 | expansin | ||
| 4BS | QCL.sdsu-4BS | TraesCS4B02G052000 | 40,780,124 | phytochrome A |
| TraesCS4B02G049800 | 38,280,457 | receptor protein kinase TMK1-like | ||
| 4BL | QCL.sdsu-4BL | TraesCS4B02G389500 | 665,956,360 | putative 2-oxoglutarate-dependent dioxygenase |
| 5BL | QCL.sdsu-5BL | TraesCS5B02G356700 | 536,321,998 | auxin Efflux Carrier family protein isoform X1 |
a
Gene ID and physical positions are based on CS RefSeq v1.1 (IWGSC, 2018).