Table 2.
5S rDNA unit lengths and copy number in Gossypium allotetraploids and diploids.
SRA Identification | Unit length1 | Copy number2 | |||
---|---|---|---|---|---|
High-throughput data4 | Cloning | High-throughput data5 | Slot blot hybridization | ||
Gossypium mustelinum | SRR769542 | 265 | 301–303 | 14,015 | 21,845 |
Gossypium hirsutum3 | SRR768357 | 297 | 295–279 | 18,412 | 11,190 |
ERR1449079 | 265 | 295–279 | 14,903 | 11,190 | |
Gossypium barbadense | SRR8624709 | 265 | 296–298 | 18,157 | 23,515 |
Gosspium raimondii | ERR1449077 | 303 | 301–303 | 11,061 | 4,730 |
Gossypium arboreum | SRR1216970 | 298 | 297–298 | 23,691 | 7,550 |
Gossypium thurberi | SRR8076131 | 302 | 301–302 | 10,607 | 2,070 |
Gossypium darwinii | SRX5347640 | 273 | n.d.6 | 24,276 | n.d. |
Gossypium tomentosum | SRR8815512 | 259 | 296–297 | 38,691 | 22,290 |
Gossypium gossypioidies | SRR8136267 | 297 | 301–303 | 3,292 | 1,145 |
Gossypium herbaceum | SRR617255 | 265 | 297–298 | 7,819 | 3,415 |
Gossypium davidsonii | SRR8136261 | 302 | 301–303 | 19,909 | 10,280 |
1Genic and intergenic region (bp). Data from sequencing of clones are from Cronn et al. (1996).
2Copy number in the somatic cell genome (2C). Slot blot hybridization results are from Cronn et al. (1996).
3Data are from two different accessions.
4K-mer assembly.
5Calculated from the genome proportion.
6n.d.—not determined.