Skip to main content
. 2020 Feb 10;11:41. doi: 10.3389/fpls.2020.00041

Table 2.

5S rDNA unit lengths and copy number in Gossypium allotetraploids and diploids.

SRA Identification Unit length1 Copy number2
High-throughput data4 Cloning High-throughput data5 Slot blot hybridization
Gossypium mustelinum SRR769542 265 301–303 14,015 21,845
Gossypium hirsutum3 SRR768357 297 295–279 18,412 11,190
ERR1449079 265 295–279 14,903 11,190
Gossypium barbadense SRR8624709 265 296–298 18,157 23,515
Gosspium raimondii ERR1449077 303 301–303 11,061 4,730
Gossypium arboreum SRR1216970 298 297–298 23,691 7,550
Gossypium thurberi SRR8076131 302 301–302 10,607 2,070
Gossypium darwinii SRX5347640 273 n.d.6 24,276 n.d.
Gossypium tomentosum SRR8815512 259 296–297 38,691 22,290
Gossypium gossypioidies SRR8136267 297 301–303 3,292 1,145
Gossypium herbaceum SRR617255 265 297–298 7,819 3,415
Gossypium davidsonii SRR8136261 302 301–303 19,909 10,280

1Genic and intergenic region (bp). Data from sequencing of clones are from Cronn et al. (1996).

2Copy number in the somatic cell genome (2C). Slot blot hybridization results are from Cronn et al. (1996).

3Data are from two different accessions.

4K-mer assembly.

5Calculated from the genome proportion.

6n.d.—not determined.