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. 2020 Feb 17;10:2780. doi: 10.1038/s41598-020-59672-2

Table 1.

Genome features of thirty-three Trichosporonaceae and two outgroup species included in the analysis.

Strains Accession BioProject Isolation source/locality Sequencing technology Assembly Size (bp) # Scaffolds N50 (bp) % G + C # Genes # tRNA # Proteins Unique Proteins Prots atleast 1 orthologue Comp* Dup¥
Apiotrichum brassicae JCM 1599T BCJI00000000 PRJDB3695 Cabbage purchased in a market/Tokyo, Japan HiSeq. 2500 23,647,732 16 2,410,059 56.47 8,334 422 7,912 1,204 6,708 91.3 0.2
Apiotrichum domesticum JCM 9580T BCFW00000000 PRJDB3573 Rotten wooden sideboard (pneumonitis patient), Japan HiSeq. 2500 24,510,922 28 3,306,260 58.52 8,536 379 8,157 582 7,575 91.1 0.6
Apiotrichum gamsii JCM 9941T BCJN00000000 PRJDB3703 Moist humus around roots/Colombia HiSeq. 2500 24,609,388 29 3,284,570 61.14 8,608 385 8,223 1,628 6,595 96.3 1.2
Apiotrichum gracile JCM 10018 BCJO00000000 PRJDB3704 Sour milk/Germany HiSeq. 2500 24,114,851 17 4,554,691 59.23 9,556 918 8,638 1,677 6,961 90.2 0.5
Apiotrichum laibachii JCM 2947T BCKV00000000 PRJDB3730 Soil HiSeq. 2500 30,616,633 26 2,819,049 59.63 11,708 1,530 10,178 1,886 8,292 92.8 0.5
Apiotrichum montevideense JCM 9937 BCFV00000000 PRJDB3572 Water purification tank/Montevideo, Uruguay HiSeq. 2500 24,872,216 61 1,972,470 58.17 8,550 375 8,175 599 7,576 91.9 0.4
Apiotrichum porosum DSM 27194 RSCE00000000 PRJNA506377 Grassland /Germany PacBio 25,479,456 32 1,376,709 59.15 9,729 576 9,153 555 8,598 96.7 0.9
Apiotrichum porosum JCM 1458T BCJG00000000 PRJDB3693 Exudate of Taxus baccata/Hamburg, Germany HiSeq. 2500 25,989,348 37 3,276,928 59.05 9,816 546 9,270 662 8,608 97.2 0.9
Apiotrichum veenhuisii JCM 10691T BCKJ00000000 PRJDB3717 Buffalo dung/Minturno, Campania, Italy HiSeq. 2500 31,617,680 35 2,551,142 59.59 10,127 1,019 9,108 1,778 7,330 92.2 0.7
Cutaneotrichosporon cutaneum ACCC 20271 LTAL00000000 PRJNA313001 Hangzhou oil refinery/China Illumina MiSeq 30,717,177 21 5,629,136 57.13 9,586 878 8,708 1,386 7,322 94.1 0.4
Trichosporon akiyoshidainum HP2023 PQXP00000000 PRJNA428315 Ryzosphere/Las Yungas rainforest, Argentina Illumina MiSeq 30,042,643 1067 53,521 60.69 11,492 1,292 10,200 1,746 8,454 90.5 4.3
Cutaneotrichosporon arboriformis JCM 14201T BEDW00000000 PRJDB5900 Urine of chronic renal failure patient/Hokkaido, Japan Illumina MiSeq 19,894,493 28 1,599,305 60.59 7,697 143 7,554 1,357 6,197 88.7 0.5
Cutaneotrichosporon curvatus JCM 1532T BCJH00000000 PRJDB3694 Sputum of tubercular patient/The Netherlands HiSeq. 2500 18,637,344 75 571,590 57.89 7,137 151 6,986 293 6,693 88.4 0.3
Cutaneotrichosporon curvatus SBUG-Y 855 LDEP00000000 PRJNA281029 Sputum of tubercular patient/Netherlands Illumina GAIIx 16,443,618 354 62,631 59.41 6,628 151 6,477 246 6,231 80.8 0.6
Cutaneotrichosporon cutaneum B3 LRUG00000000 PRJNA310294 Soil/Nanchang, Jiangxi, China Illumina HiSeq 38,696,417 592 116,762 60.30 14,851 448 14,403 1,004 13,399 94.1 55.7
Cutaneotrichosporon cutaneum JCM 1462 BCKU00000000 PRJDB3729 Probably human clinical specimen HiSeq. 2500 23,155,501 98 744,446 61.97 9,635 399 9,236 1,756 7,480 88.3 0.4
Cutaneotrichosporon cyanovorans JCM 31833 BEDZ00000000 PRJDB5903 Cyanide contaminated soil /Sasolburg, South Africa Illumina MiSeq 19,941,766 90 582,111 58.01 7,086 150 6,936 993 5,943 87.5 0.2
Cutaneotrichosporon daszewskae JCM 11166 BEDX00000000 PRJDB5901 Skin/Germany Illumina MiSeq 17,225,847 12 2,186,752 60.98 8,162 199 7,963 1,697 6,266 85.2 0.5
Cutaneotrichosporon dermatis JCM 11170 BCKR00000000 PRJDB3725 Human infected skin/Tübingen, Germany HiSeq. 2500 23,337,637 37 2,690,106 60.05 8,945 297 8,648 511 8,137 92.1 0.3
Cutaneotrichosporon mucoides JCM 9939T BCJT00000000 PRJDB3710 Meningitis case/Belgium HiSeq. 2500 40,783,511 84 1,668,497 60.14 15,434 507 14,927 1,016 13,911 94.4 60.8
Cutaneotrichosporon oleaginosum ATCC 20509T MATS00000000 PRJNA327102 Dairy plant PacBio 19,908,169 16 2,509,747 60.59 8,302 266 8,036 169 7,867 89.6 0.4
Cutaneotrichosporon oleaginosum IBC0246 JZUH00000000 PRJNA239490 - Illumina 19,835,558 180 216,041 60.74 8,267 267 8,000 197 7,803 89.1 0.5
Trichosporon asahii JCM 2466T BCLT00000000 PRJDB3696 Human, Japan HiSeq. 2500 24,687,929 36 2,256,092 59.45 9,439 502 8,937 210 8,727 94.4 1.1
Trichosporon asahii var. asahii CBS 2479T ALBS00000000 PRJNA164647 Trichosporia cutis proriasiformis progressiva, Japan 454; Illumina 24,540,311 78 1,660,894 59.01 9,364 497 8,867 287 8,580 93.2 0.5
Trichosporon asahii var. asahii CBS 8904 AMBO00000000 PRJNA172216 Maize cobs§ Illinois Peoria USA 454; Illumina 25,299,608 194 3,223,897 58.91 9,816 518 9,298 810 8,488 93.7 0.7
Trichosporon coremiiforme JCM 2938T JXYL00000000 PRJDB3697 Head lesion caused by beesting/Turrialba, Costa Rica Illumina HiSeq 42,353,277 190 1,468,092 59.60 15,969 908 15,061 2,104 12,957 95.3 69.5
Trichosporon faecale JCM 2941T JXYK00000000 PRJDB3698 Human feces Illumina HiSeq 24,653,913 32 3,676,950 60.21 9,494 471 9,023 1,233 7,790 93.6 0.7
Trichosporon inkin JCM 9195 JXYM00000000 PRJDB3701 Human Illumina HiSeq 20,339,538 18 2,739,924 62.69 7,700 318 7,382 654 6,728 89.3 0.2
Trichosporon ovoides JCM 9940 JXYN00000000 PRJDB3702 White piedra infected scalp Illumina HiSeq 40,322,879 116 2,824,449 60.22 15,163 584 14,579 2,470 12,109 96.4 70
Pascua guehoae JCM 10690 BCJX00000000 PRJDB3714 Meadow soil/Renswoude, the Netherlands HiSeq. 2500 33,698,914 35 2,162,681 59.17 11,097 1,032 10,065 3,277 6,788 91.9 1.0
Prillingera fragicola JCM 1530T BEDY00000000 PRJDB5902 Strawberry /Market in Akihabara, Tokyo, Japan Illumina MiSeq 20,263,689 21 1,928,959 58.21 8,282 297 7,985 1,620 6,365 94 0.7
Vanrija humicola JCM 1457T BCJF00000000 PRJDB3692 Soil HiSeq. 2500 22,653,840 10 3,082,120 62.74 9,255 279 8,976 495 8,481 93.7 0.4
Vanrija humicola UJ1 BFAH00000000 PRJDB6593 Soil Illumina HiSeq. 2500 22,628,423 46 1,340,400 62.76 9,270 296 8,974 483 8,491 93.5 0.4
Takashimella koratensis JCM 12878T BCKT00000000 PRJDB3728 Leaf of Lagerstroemia calyculata/Thailand HiSeq. 2500 25,142,362 31 1,454,648 54.94 9,382 54 9,328 3,020 6,308 95.1 0.2
Takashimella tepidaria JCM 11965T BCKS00000000 PRJDB3726 Stream water/Japan HiSeq. 2500 22,370,450 44 1,186,041 44.66 6,989 59 6,930 1,035 5,895 90 0.2

*Completeness and ¥duplication determined using BUSCO based on basidiomycota_odb9. §Human pathogenic (superficial and systemic).