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. 2019 Dec 21;48(3):1435–1450. doi: 10.1093/nar/gkz1191

Figure 3.

Figure 3.

YfiP is necessary for E. coli tRNA acp modification. (A) RP-HPLC elution profiles of tRNA nucleosides from wild type and ΔyfiP E. coli cells. acp3U elutes at 20.9 min and is missing in total tRNA from the ΔyfiP strain. (B) UV and MS spectra of purified acp3U. Left: UV spectrum of acp3U in 5 mM NH4OAc (pH 5.3) as detected in the diode array detector coupled to LC–MS/MS. Right: MS spectrum of acp3U at 180 V fragmentor voltage. (C) Primer extension analysis of tRNAArg-ICG acp modification including a sequencing ladder. The reverse transcriptase arrest at C48 is missing in the ΔyfiP strain and can be restored by complementation with plasmid encoded YfiP (ΔyfiP + YfiP; vc: empty vector control).