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. 2020 Feb 17;11:11. doi: 10.1186/s13100-020-00206-y

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© The Author(s) 2020

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 6 — SSR-cloud annotation of poly-A regions adjacent to annotated Alus. Full length Alus (275–325 bp) were divided into three groups based on their age (roughly corresponding to the three major expansions of Alu, AluJ, AluS, and AluY) and 5′ overlap with poly-A SSR-cloud annotated regions was evaluated. The region expected to carry the poly-A tail was defined as within 30 bp of the Alu terminus. Different cloud stringency extensions are colored with dark blue indicating highest stringency poly-A annotations found, and light blue lowest-stringency poly-A annotations. If no poly-A annotations were found, other SSR-cloud loci found are shown in light gray, and no intersecting SSR annotations found shown in dark gray