Table 3. Differentially expressed lncRNAs and differentially expressed target mRNAs.

	LncRNA						mRNA
Gene_id	Gene_name	Known/novel	Cis/trans	Cis location	Gene_id	Gene_name	Description
MSTRG.20579	CTD-2537I9.12	Known	Cis	100K	MSTRG.20574	ZNF865	Zinc finger protein 865
		Known	Cis	10K	MSTRG.20578	U2AF2	U2 small nuclear RNA auxiliary factor 2
		Known	Cis	1K	MSTRG.20578	U2AF2	U2 small nuclear RNA auxiliary factor 2
		Known	Cis	100K	MSTRG.20577	ZNF580	Zinc finger protein 580
MSTRG.11978	RP11-731F5.2	Known	Cis	100K	MSTRG.11978	IGHG4	Immunoglobulin heavy constant gamma 4 (G4m marker)
		Known	Cis	10K	MSTRG.11978	IGHG2	Immunoglobulin heavy constant gamma 2 (G2m marker)
		Known	Cis	100K	MSTRG.11987	IGHA1	Immunoglobulin heavy constant alpha 1
		Known	Cis	100K	MSTRG.11984	IGHG1	Immunoglobulin heavy constant gamma 1 (G1m marker)
MSTRG.30320	CTD-2256P15.4	Known	Cis	100K	MSTRG.30319	CCT5	Chaperonin containing TCP1, subunit 5 (epsilon)
		Known	Cis	10K	MSTRG.30319	CCT5	Chaperonin containing TCP1, subunit 5 (epsilon)
		Known	Cis	100K	MSTRG.30322	CMBL	Carboxymethylenebutenolidase homolog (Pseudomonas)
MSTRG.39692	RP11-229P13.23	Known	Cis	100K	MSTRG.39695	NPDC1	Neural proliferation, differentiation and control, 1
		Known	Cis	100K	MSTRG.39703	DPP7	Dipeptidyl-peptidase 7
		Known	Cis	100K	MSTRG.39696	ENTPD2	Ectonucleoside triphosphate diphosphohydrolase 2
		Known	Cis	10K	MSTRG.39691	SAPCD2	Suppressor APC domain containing 2