Table A10:
Simulation results mean(sd) based on 200 replication. p = 500 and SNP data with AR structure, which has 8 main effects and 6 interactions.
| Main |
Interaction |
|||||||
|---|---|---|---|---|---|---|---|---|
| AUC | pAUC | Top40 | AUC | pAUC | Top40 | |||
| n=100 | C-Norm | Sig | 75.9(0.1) | 60.3(0.13) | 3.3(1.15) | 72.5(0.12) | 54.5(0.16) | 0.9(0.72) |
| Lasso | 78.9(0.08) | 64.7(0.11) | 3.4(1.11) | 86.1(0.1) | 79.5(0.12) | 3.2(0.8) | ||
| MCP | 72.2(0.1) | 53.8(0.13) | 2.3(1.24) | 67.9(0.11) | 50.7(0.12) | 2.1(0.68) | ||
| Lassointer | 0(0) | 0(0) | 0.6(0) | 79.4(0.08) | 65.7(0.11) | 2(0.89) | ||
| MCPinter | 0(0) | 0(0) | 0.6(0) | 78.7(0.09) | 64.6(0.11) | 2(0.86) | ||
| sgMCP | 87(0.06) | 72.5(0.1) | 4.4(0.89) | 93.1(0.05) | 83.6(0.09) | 3.6(0.88) | ||
| C-MNL | Sig | 63(0.11) | 41.7(0.13) | 1.9(1.08) | 56.1(0.11) | 32(0.14) | 0.3(0.43) | |
| Lasso | 67.3(0.11) | 47.8(0.15) | 2.1(1.15) | 68.5(0.14) | 55.1(0.18) | 1.6(0.94) | ||
| MCP | 62.7(0.11) | 42.1(0.15) | 1.9(1.17) | 57.2(0.12) | 37.8(0.15) | 1.2(0.89) | ||
| Lassointer | 0(0) | 0(0) | 0.6(0) | 67.3(0.11) | 48.4(0.14) | 0.9(0.72) | ||
| MCPinter | 0(0) | 0(0) | 0.6(0) | 66.1(0.11) | 46.7(0.15) | 0.9(0.73) | ||
| sgMCP | 81.3(0.08) | 62.9(0.13) | 3.7(1.21) | 83.5(0.11) | 65.1(0.18) | 1.9(1.24) | ||
| C-t | Sig | 57.3(0.1) | 32.4(0.12) | 1.2(0.98) | 60.4(0.14) | 37.4(0.17) | 0.3(0.5) | |
| Lasso | 59.5(0.12) | 35.8(0.15) | 1.4(1.12) | 67.1(0.17) | 51.1(0.21) | 1.2(0.96) | ||
| MCP | 58.1(0.11) | 35.8(0.16) | 1.6(1.37) | 59.7(0.13) | 38.7(0.14) | 0.7(0.61) | ||
| Lassointer | 0(0) | 0(0) | 0.6(0) | 62.5(0.12) | 40.9(0.14) | 0.6(0.65) | ||
| MCPinter | 0(0) | 0(0) | 0.6(0) | 61.7(0.12) | 39.8(0.14) | 0.6(0.64) | ||
| sgMCP | 71.3(0.11) | 47.4(0.16) | 2.2(1.29) | 72.3(0.14) | 48(0.2) | 0.8(0.7) | ||
| B-Logistic | Sig | 52.6(0.1) | 26.9(0.12) | 0.5(0.67) | 51.8(0.13) | 24.1(0.13) | 0.1(0.23) | |
| Lasso | 52.1(0.1) | 34.9(0.12) | 1.4(0.74) | 46.2(0.13) | 32.8(0.15) | 0.3(0.56) | ||
| MCP | 51(0.1) | 32.2(0.11) | 1.3(0.71) | 38.5(0.13) | 22.6(0.13) | 0.2(0.39) | ||
| Lassointer | 0(0) | 0(0) | 0.6(0) | 41.1(0.13) | 23.1(0.14) | 0.1(0.29) | ||
| MCPinter | 0(0) | 0(0) | 0.6(0) | 38.9(0.13) | 23(0.13) | 0.1(0.29) | ||
| sgMCP | 60(0.09) | 32.7(0.11) | 1.1(0.72) | 57(0.14) | 30.2(0.17) | 0.3(0.55) | ||
| n=500 | C-Norm | Sig | 96.7(0.03) | 93.6(0.05) | 6.8(0.75) | 90.7(0.08) | 83(0.12) | 2.8(0.9) |
| Lasso | 96(0.02) | 94.3(0.04) | 6.7(0.65) | 94.8(0.04) | 94.6(0.05) | 4.9(0.57) | ||
| MCP | 95.4(0.03) | 92.9(0.04) | 6.9(0.64) | 80.7(0.09) | 68.3(0.13) | 2(1.12) | ||
| Lassointer | 0(0) | 0(0) | 0.6(0) | 92(0.05) | 85.7(0.07) | 3.7(0.75) | ||
| MCPinter | 0(0) | 0(0) | 0.6(0) | 91.9(0.05) | 85.7(0.07) | 3.7(0.72) | ||
| sgMCP | 99.3(0.01) | 96.2(0.03) | 7(0.67) | 99.8(0) | 96.6(0.03) | 5.4(0.71) | ||
| C-MNL | Sig | 88.4(0.07) | 79.1(0.11) | 5(1.14) | 73.9(0.11) | 58.4(0.14) | 1.3(0.74) | |
| Lasso | 91.1(0.06) | 85.4(0.09) | 5.8(1.22) | 81.5(0.12) | 74.9(0.14) | 3.4(0.95) | ||
| MCP | 83.4(0.08) | 71.1(0.13) | 4.1(1.4) | 68.7(0.1) | 52.8(0.12) | 1.3(0.73) | ||
| Lassointer | 0(0) | 0(0) | 0.6(0) | 93.3(0.05) | 86.9(0.08) | 3.5(0.78) | ||
| MCPinter | 0(0) | 0(0) | 0.6(0) | 92.7(0.05) | 86(0.08) | 3.3(0.79) | ||
| sgMCP | 97.6(0.02) | 90.9(0.05) | 6.5(0.9) | 98.9(0.02) | 91.6(0.09) | 4.7(1.1) | ||
| C-t | Sig | 78.5(0.1) | 64.4(0.13) | 3.5(1.33) | 71.3(0.09) | 51.7(0.14) | 1(0.66) | |
| Lasso | 80.4(0.1) | 68.5(0.13) | 4(1.17) | 85(0.08) | 78.7(0.11) | 3.3(0.92) | ||
| MCP | 73(0.1) | 54(0.15) | 2.7(1.2) | 70.2(0.1) | 51.7(0.14) | 1.7(0.78) | ||
| Lassointer | 0(0) | 0(0) | 0.6(0) | 83(0.08) | 70.7(0.12) | 2.5(0.9) | ||
| MCPinter | 0(0) | 0(0) | 0.6(0) | 82.1(0.09) | 69(0.13) | 2.4(0.95) | ||
| sgMCP | 91.2(0.07) | 80.9(0.11) | 5.3(1.37) | 92.3(0.05) | 78.4(0.1) | 3.4(1.36) | ||
| B-Logistic | Sig | 66.2(0.12) | 45.6(0.16) | 2.1(1.35) | 63.9(0.1) | 41.9(0.14) | 0.7(0.66) | |
| Lasso | 63.8(0.09) | 57.8(0.1) | 3.3(0.99) | 59(0.12) | 59.7(0.16) | 1.6(0.69) | ||
| MCP | 60.9(0.1) | 53.9(0.13) | 3.1(1.14) | 48.5(0.09) | 40.6(0.12) | 1(0.63) | ||
| Lassointer | 0(0) | 0(0) | 0.6(0) | 62.9(0.1) | 52.2(0.13) | 1.2(0.75) | ||
| MCPinter | 0(0) | 0(0) | 0.6(0) | 62.9(0.1) | 52.4(0.14) | 1.2(0.74) | ||
| sgMCP | 78(0.08) | 58.4(0.12) | 3.4(1.2) | 79.1(0.1) | 59.1(0.15) | 1.3(0.91) | ||