Table 3.
Ubiquitination status of 18 prognosis-related molecules
| UniProt accession | Gene symbol | Description | Number of modified sites | Modified peptides | Ratio (T/N) |
|---|---|---|---|---|---|
| P25705 | ATP5A1 | ATP synthase subunit alpha | 1 | VGLK*APGIIPR | NA |
| P68363 | TBA1B | Tubulin alpha-1B chain | 6 | AYHEQLSVAEITNACFEPANQMVK*CDPR | NA |
| DVNAAIATIK*TKR | 9.37 | ||||
| DVNAAIATIKTK*R | 21.89 | ||||
| GDVVPK*DVNAAIATIK | 5.07 | ||||
| QLFHPEQLITGK*EDAANNYAR | 4.74 | ||||
| TIGGGDDSFNTFFSETGAGK*HVPR | 4.98 | ||||
| P21796 | VDAC1 | Voltage-dependent anion-selective channel protein 1 | 1 | AVPPTYADLGK*SAR | NA |
| P11142 | HSPA8 | Heat shock cognate 71 kDa protein | 7 | AMTK*DNNLLGK | NA |
| CNEIINWLDK*NQTAEKEEFEHQQK | 2.04 | ||||
| ELEK*VCNPIITK | 6.59 | ||||
| GTLDPVEK*ALR | NA | ||||
| LDK*SQIHDIVLVGGSTR | NA | ||||
| MVQEAEK*YKAEDEK | 2.55 | ||||
| NQTAEKEEFEHQQK*ELEK | NA | ||||
| P12004 | PCNA | Proliferating cell nuclear antigen | 1 | ILK*CAGNEDIITLR | NA |
| P08670 | VIM | Vimentin | 9 | ETNLDSLPLVDTHSK*R | 0.36 |
| FLEQQNK*ILLAELEQLKGQGK | 0.29 | ||||
| ILLAELEQLK*GQGK | 0.49 | ||||
| K*LLEGEESR | 0.26 | ||||
| K*VESLQEEIAFLK | 0.17 | ||||
| LREK*LQEEMLQR | 0.41 | ||||
| RQVDQLTNDK*AR | 0.21 | ||||
| RQVQSLTCEVDALK*GTNESLER | 0.36 | ||||
| TLLIK*TVETR | 0.26 | ||||
| P06576 | ATP5B | ATP synthase subunit beta | 1 | VLDSGAPIK*IPVGPETLGR | NA |
| P68032 | ACTC1 | Actin, alpha cardiac muscle 1 | 1 | VAPEEHPTLLTEAPLNPK*ANR | 0.46 |
| P04792 | HSPB1 | Heat shock protein beta-1 | 1 | AQLGGPEAAK*SDETAAK | NA |
| P08069 | IGF1R | Insulin-like growth factor 1 receptor | 1 | VAIK*TVNEAASMR | NA |
| Q96J02 | ITCH | E3 ubiquitin-protein ligase Itchy homolog | 2 | FIYGNQDLFATSQSK*EFDPLGPLPPGWEK | 3.05 |
| VYYVDHVEK*R | NA | ||||
| P08758 | ANXA5 | Annexin A5 | 4 | GAGTNEK*VLTEIIASR | 0.38 |
| HALK*GAGTNEK | 0.44 | ||||
| LIVALMK*PSR | NA | ||||
| LYDAYELK*HALK | 0.17 | ||||
| P61088 | UBE2N | Ubiquitin-conjugating enzyme E2 N | 2 | DK*WSPALQIR | 0.14 |
| ICLDILK*DK | 0.26 | ||||
| O94888 | UBXN7 | UBX domain-containing protein 7 | 1 | DVWSNEAVK*NIIR | NA |
| Q9Y277 | VDAC3 | Voltage-dependent anion-selective channel protein 3 | 1 | CNTPTYCDLGK*AAK | NA |
| Q6P2Q9 | PRPF8 | Pre-mRNA-processing-splicing factor 8 | 2 | DLILADYGKK* | NA |
| DLILADYGK*K | NA | ||||
| O43175 | PHGDH | D-3-phosphoglycerate dehydrogenase | 2 | NAGNCLSPAVIVGLLK*EASK | NA |
| SATK*VTADVINAAEK | NA | ||||
| P33527 | ABCC1 | Multidrug resistance-associated protein 1 | 3 | RPVK*DGGGTNSITVR | NA |
| TYQVAHMKSK* | NA | ||||
| TYQVAHMK*SK | NA |