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. 2020 Feb 18;7:58. doi: 10.1038/s41597-020-0385-y

Table 2.

Dataframe structure of all three dataframes df_62 k, df_31 k and df_5 k.

No. Column name Unit Method Dataframes Description
1 refcode_csd 62 k, 31 k, 5 k CSD reference code, unique identifier for the crystal from which the molecule was extracted
2 canonical_smiles Open Babel 62 k, 31 k, 5 k Molecular string representations derived from DFT PBE + vdW relaxed geometries.
3 inchi Open Babel 62 k, 31 k, 5 k
4 number_of_atoms 62 k, 31 k, 5 k Number of atoms in the molecule
5 xyz_pbe_relaxed Å PBE + vdW (vacuum) 62 k, 31 k, 5 k String in XYZ-file format of DFT PBE + vdW relaxed geometry. Line 1 contains the number of atoms. Line 2 is empty. The remaining lines contain atomic type and coordinate (x, y, z).
6 energies_occ_pbe eV PBE + vdW (vacuum) 62 k, 31 k, 5 k List of eigenvalues of occupied molecular Kohn-Sham orbitals. Given in ascending order, the last value is the HOMO energy.
7 energies_occ_pbe0_vac_tier2 eV PBE0 (vacuum) 62 k, 31 k, 5 k
8 energies_occ_pbe0_water eV PBE0 (water) 31 k, 5 k
9 energies_occ_pbe0_vac_tzvp eV PBE0 (vacuum) 5 k
10 energies_occ_pbe0_vac_qzvp eV PBE0 (vacuum) 5 k
11 energies_occ_gw_tzvp eV G0W0@PBE0 (vacuum) 5 k
12 energies_occ_gw_qzvp eV G0W0@PBE0 (vacuum) 5 k
13 cbs_occ_gw eV G0W0@PBE0 (vacuum) 5 k List of CBS energies of occupied states computed from G0W0@PBE0 TZVP and QZVP energies from 10 and 11. Same order as lists described above.
14 energies_unocc_pbe eV PBE + vdW (vacuum) 62 k, 31 k, 5 k List of eigenvalues of virtual (unoccupied) molecular Kohn-Sham orbitals. Given in ascending order, the first value is the LUMO energy. Only virtual states below the vacuum level (i.e. with negative eigenvalue) are listed. If the LUMO energy is positive, only the LUMO energy is listed. If 20 has more negative eigenvalues than 19, we also include positive eigenvalues in 19 so that both lists in 19 and 20 have equal length.
15 energies_unocc_pbe0_vac_tier2 eV PBE0 (vacuum) 62 k, 31 k, 5 k
16 energies_unocc_pbe0_water eV PBE0 (water) 31 k, 5 k
17 energies_unocc_pbe0_vac_tzvp eV PBE0 (vacuum) 5 k
18 energies_unocc_pbe0_vac_qzvp eV PBE0 (vacuum) 5 k
19 energies_unocc_gw_tzvp eV G0W0@PBE0 (vacuum) 5 k
20 energies_unocc_gw_qzvp eV G0W0@PBE0 (vacuum) 5 k
21 cbs_unocc_gw eV G0W0@PBE0 (vacuum) 5 k List of CBS energies of unoccupied states computed from G0W0@PBE0 TZVP and QZVP energies from 19 and 20. Same order as lists described above.
22 total_energy_pbe eV PBE + vdW (vacuum) 62 k, 31 k, 5 k Total energy of the DFT calculations. Note, for consistency with 22, 23 and 24 also include the vdW contribution to the total energy. 25 and 26 do not include it.
23 total_energy_pbe0_vac_tier2 eV PBE0 (vacuum) 62 k, 31 k, 5 k
24 total_energy_pbe0_water eV PBE0 (water) 31 k, 5 k
25 total_energy_pbe0_vac_tzvp eV PBE0 (vacuum) 5 k
26 total_energy_pbe0_vac_qzvp eV PBE0 (vacuum) 5 k
27 hirshfeld_pbe qe PBE + vdW (vacuum) 62 k, 31 k, 5 k List of Hirshfeld partial charges on atoms. Same order as atoms in xyz_pbe_relaxed.
28 hirshfeld_pbe0_vac_tier2 qe PBE0 (vacuum) 62 k, 31 k, 5 k
29 hirshfeld_pbe0_water qe PBE0 (water) 31 k, 5 k

Columns 1 to 3 contain molecular identifiers. Columns 5 to 29 contain molecular properties computed at respective level of theory. All mentioned energies are given in eV.