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. 2020 Jan 10;295(7):1915–1925. doi: 10.1074/jbc.RA119.012078

Table 2.

Summary of kinetic parameters determined by single-molecule analysis and reaction scheme

Kinetic parameters kona koffNPa,b konP/konNPa,c ktrd kpce Pd,f koffPd kcatg
m1 μm1 s1 s1 nP/nNP nm/s s1 s1 s1
WT 8.2 × 108 ± 3.0 × 107 1.2 0.074 ± 0.0041 52 ± 0.53 50 30 1.4 ± 0.26 2.9
F232W/F396W 9.1 × 108 ± 4.3 × 107 0.99 0.076 ± 0.0089 51 ± 0.72 49 52 0.82 ± 0.089 4.1

a kon, konP/konNP, and koffNP values were obtained from single-molecule fluorescence imaging analysis.

b koffNP, which was the average koff, was assumed to only contain nonproductive binding.

c konP/konNP or nP/nNP was denoted as the productive binding ratio, where nP and nNP represent the number of moving and non-moving molecules for a total of 40 s observation, respectively. For the analysis, we defined moving molecules as the molecules which showed movements larger than 20 nm for 3 or more frames.

d ktr, processivity (P), and koffP were obtained by HS-AFM observation. The molecules that showed movements for 3 or more frames were analyzed.

e ktr was used to denote the translational velocity. kpc was calculated by dividing the ktr value by the step size (a product size, 1.04 nm).

f P was estimated from the run length divided by the step size (a product size, 1.04 nm).

g kcat was calculated from Equation 3.