Table 2.
Summary of kinetic parameters determined by single-molecule analysis and reaction scheme
| Kinetic parameters | kona | koffNPa,b | konP/konNPa,c | ktrd | kpce | Pd,f | koffPd | kcatg |
|---|---|---|---|---|---|---|---|---|
| m−1 μm−1 s−1 | s−1 | nP/nNP | nm/s | s−1 | s−1 | s−1 | ||
| WT | 8.2 × 108 ± 3.0 × 107 | 1.2 | 0.074 ± 0.0041 | 52 ± 0.53 | 50 | 30 | 1.4 ± 0.26 | 2.9 |
| F232W/F396W | 9.1 × 108 ± 4.3 × 107 | 0.99 | 0.076 ± 0.0089 | 51 ± 0.72 | 49 | 52 | 0.82 ± 0.089 | 4.1 |
a kon, konP/konNP, and koffNP values were obtained from single-molecule fluorescence imaging analysis.
b koffNP, which was the average koff, was assumed to only contain nonproductive binding.
c konP/konNP or nP/nNP was denoted as the productive binding ratio, where nP and nNP represent the number of moving and non-moving molecules for a total of 40 s observation, respectively. For the analysis, we defined moving molecules as the molecules which showed movements larger than 20 nm for 3 or more frames.
d ktr, processivity (P), and koffP were obtained by HS-AFM observation. The molecules that showed movements for 3 or more frames were analyzed.
e ktr was used to denote the translational velocity. kpc was calculated by dividing the ktr value by the step size (a product size, 1.04 nm).
f P was estimated from the run length divided by the step size (a product size, 1.04 nm).
g kcat was calculated from Equation 3.