TABLE 1.
Characteristics of reconstructed genome bins and their relative abundances
| Bin IDa | Taxonomy (class) |
No. of contigs |
Assem. sizeb (Mbp) |
GC content (%) |
Est. comp.c (%) |
Est. cont.d (%) |
% relative abundance based on 16S rRNA gene sequencese
|
|||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0.22 μm (D22) |
3 μm (D22) |
0.22 μm (D71) |
3 μm (D71) |
0.22 μm (avg) |
3 μm (avg) |
|||||||
|
Synechococcus sp. YX04-3 (Bin1) |
Cyanobacteria | 16 | 2.46 | 59.3 | 99.50 | 0.00 | 30.73 | 16.14 | 19.56 | 11.40 | 34.00 | 14.15 |
|
Muricauda sp. Bin2 |
Flavobacteria | 5 | 3.1 | 42 | 99.00 | 1.54 | 41.83 | 19.94 | 30.51 | 17.82 | 26.91 | 17.47 |
|
Winogradskyella sp. Bin3 |
Flavobacteria | 10 | 3.15 | 33.8 | 99.20 | 2.47 | 5.12 | 12.61 | 1.20 | 6.81 | 3.17 | 10.80 |
|
Phycisphaera sp. Bin4 |
Phycisphaerae | 1 | 3.26 | 61.2 | 98.90 | 0.00 | 6.93 | 31.36 | 17.68 | 32.57 | 10.41 | 27.57 |
|
Oricola sp. Bin5 |
Alphaproteo- bacteria |
7 | 3.63 | 64.8 | 99.20 | 0.39 | 8.03 | 1.82 | 4.77 | 1.31 | 6.49 | 1.67 |
|
Balneola sp. Bin6 |
Flavobacteria | 11 | 3.65 | 40 | 100 | 0.00 | 2.70 | 1.19 | 16.87 | 8.75 | 8.46 | 5.09 |
a
ID, identifier.
b
Assem. size, assembly size.
c
Est. comp., estimated completeness.
d
Est. cont., estimated contamination.
e
Percent relative abundance based on 16S rRNA gene sequences from 0.22-to-3-μm and >3-μm size fractions on day 22 (D22) and 71 (D71) of cultivation. The average information (avg) for 36 samples collected from two size fractions, 0.22-to-3-μm and >3-μm size fractions are shown in the two rightmost columns.