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. 2020 Feb 21;115:e190242. doi: 10.1590/0074-02760190242

TABLE II. Proteins identified by profile hidden Markov models (HMMs) search.

Group Class BLASTP reciprocal best-hit
Gen ID Reference Protein Organism Similarity (%) Identity (%)
Ubiquitin Ub GL50803_8843 8 Ubiquitin Homo sapiens 70 39
UbL40 GL50803_5665 9 Ubiquitin-60S ribosomal protein L40 Trypanosoma brucei 69 48
UbS27 GL50803_16298 10 Ubiquitin-40S ribosomal protein S27a Kluyveromyces lactis 72 57
Ubiquitin Like SUMO GL50803_7760 13 Small ubiquitin-related modifier 1 (SUMO) H. sapiens 64 47
NEDD8 GL50803_7110 Related to Ubiquitin 1(RUB 1) or NEDD8 Arabidopsis thaliana 95 84
URM1 GL50803_11884 11 Ubiquitin-related modifier 1 (URM1) Schizosaccharomyces pombe 55 35
UFM1 GL50803_104982 Ubiquitin-fold modifier 1 (UFM1) Pongo abelii 51 29
E1 UBA1 GL50803_10661 10 Ubiquitin-activating enzyme E1 S. pombe 52 35
E1-Like UBA2 GL50803_6288 13 SUMO-activating enzyme subunit 2 Dictyostelium discoideum 46 23
UBA3 GL50803_4083 NEDD8-activating enzyme E1 catalytic subunit S. pombe 49 31
UBA4 GL50803_12853 Adenylyltransferase and sulfurtransferase UBA4 S. pombe 55 39
MoeB GL50803_11436 Molybdopterin biosynthesis MoeB protein Trepomonas sp. PC1 67 49
E2 GL50803_15252 10 Ubiquitin-conjugating enzyme E2 5A Oryza sativa 76 64
GL50803_12950 10 Ubiquitin-conjugating enzyme E2 2 Ashbya gossypii 63 45
GL50803_15162 10 Ubiquitin-conjugating enzyme E2 2 Triticum aestivum 66 48
GL50803_3978 9 Ubiquitin-conjugating enzyme E2 PEX 4 A. thaliana 60 41
GL50803_27055 10 Ubiquitin-conjugating enzyme E2 S Drosophila simulans 61 30
GL50803_6524 9 Ubiquitin-conjugating enzyme E2 J2 H. sapiens 59 41
GL50803_3171 9 Ubiquitin-conjugating enzyme E2 UBC14 A. thaliana 73 54
GL50803_2876 10 Ubiquitin-conjugating enzyme E2 UBC2 T. aestivum 69 48
GL50803_5921 10 Ubiquitin-conjugating enzyme E2 J2 H. sapiens 61 39
GL50803_31576 9 NEDD8-conjugating enzyme UBC12 Yarrowia lipolytica 58 33
GL50803_24068 9 SUMO-conjugating enzymeUBC9 S. pombe 68 55
GL50803_8638 ubiquitin-conjugating enzyme UBC6 S. pombe 64 43
E3 HECT GL50803_137754 10 E3 Ubiquitin protein ligase E3A H. sapiens 54 36
GL50803_17386 10 E6AP HECT Catalitic domain E3 Ligase H. sapiens 53 34
GL50803_16321 E3 ubiquitin protein ligase Pub1 S. pombe 45 28
GL50803_32730 HECT-type E3 ubiquitin transferase Caenorhabditis elegans 44 31
GL50803_3117 HECT type ubiquitin ligase Eimeria maxima 47 31
RING finger domain: Zf-C3HC4 GL50803_16541 E3 ligase XBAT32; Ankyrin repeat domain and RING finger A. thaliana 46 29
GL50803_4843 E3 ligase XBAT33 A. thaliana 44 30
GL50803_16227 E3 ligase XBAT33 A. thaliana 44 33
GL50803_14203 E3 ligase-XBOS33 O. sativa Japonica 41 30
GL50803_17552 E3 ligase XBAT34 A. thaliana 49 32
GL50803_4320 E3 ligase XBOS36 O. sativa Japonica 38 26
GL50803_10605 E3 ligase XBOS31 O. sativa Japonica 46 34
GL50803_14934 Ser/Thr-protein kinase NEK7; H. sapiens 49 32
GL50803_2351 E3 ubiquitin-protein ligase mind-bomb D. melanogaster 53 37
GL50803_6284 E3 ubiquitin-protein ligase mind-bomb D. melanogaster 46 31
GL50803_21799 E3 ubiquitin-protein ligase mind-bomb D. melanogaster 41 25
GL50803_33807 E3 ubiquitin-protein ligase mind-bomb 1 (MIB1) Danio rerio 47 31
GL50803_6602 E3 ubiquitin-protein ligase MIB1 H. sapiens 45 28
GL50803_4329 E3 ubiquitin-protein ligase MIB1 Mus musculus 43 23
GL50803_10703 E3 ubiquitin-protein ligase MIB1 Xenopus laevis 44 28
GL50803_8438 E3 ubiquitin-protein ligase MIB1 D. rerio 41 26
GL50803_89845 E3 ubiquitin-protein ligase MIB1 X. laevis 41 25
GL50803_115054 E3 ubiquitin-protein ligase MIB 1 X. laevis 40 24
GL50803_15412 E3 ubiquitin-protein ligase MIB1 M. musculus 40 22
GL50803_13901 E3 ubiquitin-protein ligase Mind bomb 2 (MIB2) H. sapiens 48 33
GL50803_6650 E3 ubiquitin-protein ligase MIB2 Gallus gallus 42 29
GL50803_11389 E3 ubiquitin-protein ligase MIB2 G. gallus 39 24
GL50803_8325 Baculoviral IAP Repeat-containing Protein 7; E3 Ligase BIRC3 H. sapiens 71 50
GL50803_14206 Baculoviral IAP repeat-containing protein 2 H. sapiens 61 45
GL50803_7021 Baculoviral IAP repeat-containing protein 2 M. musculus 50 34
GL50803_94662 Baculoviral IAP repeat-containing protein 2 M. musculus 46 28
GL50803_6589 Baculoviral IAP repeat-containing protein 1 A. californica nucleopolyhedrovirus 58 43
GL50803_113284 E3 ubiquitin-protein ligase LUL4 A. thaliana 60 39
GL50803_92983 E3 ubiquitin-protein ligase LUL4 A. thaliana 56 39
GL50803_114442 E3 ubiquitin-protein ligase LUL4 A. thaliana 56 39
GL50803_17329 E3 ubiquitin-protein ligase TRIM5 H. sapiens 56 34
GL50803_21233 E3 ubiquitin-protein ligase TRIM38 B. taurus 39 23
GL50803_34160 E3 ubiquitin Tripartite motif-containing protein 43C M. musculus 58 42
GL50803_4837 E3 ubiquitin Tripartite motif-containing protein 46 M. musculus 56 36
GL50803_95254 E3 ubiquitin-protein ligase TRIM58 H. sapiens 47 38
GL50803_106320 RING finger and CHY zinc finger domain E3 Pirh2 M. musculus 47 35
GL50803_101011 RING finger and CHY zinc finger domain E3 Pirh2 M. musculus 41 30
GL50803_15187 RING finger and CHY zinc finger domain- H. sapiens 52 37
GL50803_103659 RING finger and CHY zinc finger domain- H. sapiens 48 34
GL50803_1774 RING finger and CHY zinc finger domain- S. pombe 51 37
GL50803_11054 E3 ubiquitin-protein ligase RNF 168 X. laevis 63 45
GL50803_3146 E3 ubiquitin-protein ligase RNF 213 D. rerio 57 36
GL50803_3279 E3 ubiquitin-protein ligase RING1-like A. thaliana 59 47
GL50803_16157 E3 RING finger protein Tetrahymena thermophila 45 27
GL50803_15868 E3 ubiquitin-protein ligase Zswim2 M. musculus 45 28
GL50803_9850 Postreplication repair E3 ubiquitin-protein ligase Rad18 S. pombe 49 35
GL50803_14796 E3 ubiquitin-protein ligase; PDZ protein 3 H. sapiens 52 33
GL50803_4343 E3 ubiquitin-protein ligase hel2 (histone E3 ligase) S. pombe 46 32
GL50803_95918 E3 ubiquitin ligase bre1 Neurospora crassa 57 36
GL50803_8731 10 E3 ubiquitin ligase RMA1 A. thaliana 52 34
GL50803_113625 Transcriptional adapter 2-beta X. laevis 46 28
GL50803_21398 E3 ubiquitin-protein ligase ARI11 A. thaliana 63 48
GL50803_9155 E3 ubiquitin-protein ligase RNF181 X. laevis 54 33
GL50803_13737 Probable E3 ubiquitin-protein ligase LUL4 A. thaliana 51 34
GL50803_11052 Probable E3 ubiquitin-protein ligase LUL4 A. thaliana 54 32
GL50803_21792 E3 ubiquitin-protein ligase SP1 A. thaliana 54 37
GL50803_4430 E3 ubiquitin-protein ligase XIAP X. laevis 51 35
GL50803_16687 Baculoviral IAP repeat-containing protein 3 H. sapiens 62 45
GL50803_17109 E3 ubiquitin transferase Pep5 M. musculus 47 27
GL50803_11930 SUMO-protein ligase pli1; MIZ/SP-RING S. pombe 54 33
GL50803_10261 SUMO-protein ligase PIAL2; MIZ/SP-RING A. thaliana 46 25
GL50803_21622 RING finger protein 151 Bos taurus 61 52
GL50803_9807 E3 ubiquitin-protein ligase PRT1/N-end rule pathway A. thaliana 54 34
GL50803_14241 E3 ubiquitin-protein ligase PRT1/N-end rule pathway A. thaliana 52 40
GL50803_4897 RING finger protein 32 H. sapiens 44 26
GL50803_16464 Transmembrane E3 ubiquitin-protein ligase FLY1 A. thaliana 54 33
GL50803_4044 Transmembrane E3 ubiquitin-protein ligase 1 TUL1 Saccharomyces cerevisiae 55 47
GL50803_7356 E3 ubiquitin-protein ligase LRSAM1 H. sapiens 42 25
GL50803_16475 Structure-specific endonuclease subunit SLX1 D. rerio 50 36
GL50803_8432 E3 Ubiquitin ligase APC 11 / Ring Box protein 1 (RBX) M. musculus 44 28
GL50803_8241 RING-box protein 2 (RBX) / Nedd8 E3 Ligase M. musculus 55 39
Zf-UBR GL50803_13708 10 E3 ubiquitin-protein ligase UBR1/E3 alfa H. sapiens 53 39
Zf-B Box GL50803_8140 E3 ubiquitin-protein ligase arc-1 C. elegans 45 27
Zf-Mynd GL50803_17543 Zinc finger MYND domain-containing protein 10 H. sapiens 41 24
GL50803_17492 SET domain and MYND-type zinc finger protein 6 S. pombe 60 48
PHD-finger GL50803_15559 Jade PHD finger protein 1 H. sapiens 48 37
GL50803_8381 PHD-ARID4 (ARID domain-containing protein 4) A. thaliana 44 33
DUB UCH GL50803_14460 10 Ubiquitin carboxyl-terminal hydrolase 4 S. cerevisiae 46 32
GL50803_16090 10 Ubiquitin carboxyl-terminal hydrolase 8 H. sapiens 39 26
GL50803_5533 10 Ubiquitin carboxyl-terminal hydrolase 17-like M. musculus 40 24
GL50803_6317 9 Ubiquitin carboxyl-terminal hydrolase 44 D. rerio 55 37
GL50803_102710 9 Ubiquitin carboxyl-terminal hydrolase 14 S. pombe 42 23
GL50803_8189 10 Ubiquitin carboxyl-terminal hydrolase 6 A. thaliana 41 24
GL50803_16438 13 Sentrin specific protease SENP5 (SUMOylase 1) M. musculus 52 29
GL50803_10218 Ubiquitin carboxyl-terminal hydrolase L3 (deNEDDylase) Nanorana parkeri 42 22
JAMM/ MPN GL50803_16823 11 Ubiquitin carboxyl-terminal hydrolase RPN11 S. pombe 59 39
PPPDE GL50803_24425 12 Desumoylating isopeptidase 1 H. sapiens 64 40
OTU GL50803_88556 Otubain H. sapiens 41 21
MINDY GL50803_7349 Ubiquitin carboxyl-terminal hydrolase MINDY-4 B. taurus 47 31