Table 2.
CON | XN | DXN | TXN | SEM | XN vs CON | DXN vs CON | TXN vs CON | |
---|---|---|---|---|---|---|---|---|
Microbial Number (Counts/DNA) | P-values (Comparisons) | |||||||
Total | 48,896 | 46,062 | 39,634 | 33,259 | 2,683 | 0.42 | 0.01 | <0.001 |
Firmicutes | 27,397 | 26,676 | 28,295 | 25,034 | 2,555 | 0.84 | 0.80 | 0.51 |
Lachnospiraceae | 17,737 | 18,185 | 19,467 | 17,125 | 1871 | 0.86 | 0.50 | 0.81 |
Ruminococcaceae | 5,696 | 7,237 | 6,797 | 6,715 | 761 | 0.14 | 0.29 | 0.34 |
Erysipelotrichaceae | 406 | 500 | 1,172 | 1,064 | 161 | 0.67 | 0.001 | 0.005 |
Eubacteriaceae | 3,087 | 339 | 62 | 54 | 180 | <0.001 | <0.001 | <0.001 |
Peptostreptococcaceae | 276 | 272 | 217 | 44 | 78 | 0.97 | 0.58 | 0.04 |
Clostridiaceae | 19.9 | 0.8 | 0.3 | 0.1 | 3.7 | <0.001 | <0.001 | <0.001 |
Halobacteroidacea | 102.4 | 73.0 | 0.3 | 0 | 8.4 | 0.01 | <0.001 | <0.001 |
Lactobacillaceae | 15 | 4 | 1 | 1 | 3 | 0.01 | 0.002 | 0.002 |
Paenibacillaceae | 0.1 | 0.1 | 1.5 | 1.2 | 0.3 | 0.05 | <0.001 | 0.007 |
Natranaerovirga | 0.1 | 0 | 545.1 | 1.2 | 287.1 | 1 | 0.17 | 1 |
Enterococcaceae | 5.0 | 1.3 | 0.4 | 2.7 | 1.4 | 0.06 | 0.02 | 0.24 |
Staphylococcaceae | 2.3 | 1.8 | .3 | 0.4 | 0.6 | 0.49 | 0.24 | 0.03 |
Bacillaceae | 0.7 | 1.3 | 1.8 | 0.9 | 0.6 | 0.41 | 0.15 | 0.77 |
Bacteroidetes | 17,887 | 16,192 | 2,375 | 590 | 1,330 | 0.35 | <0.001 | <0.001 |
Porphyromonadaceae | 17,838 | 16,154 | 2,367 | 584 | 1,328 | 0.35 | <0.001 | <0.001 |
Flavobacteriaceae | 2.6 | 3.1 | 4.9 | 3.5 | 1.2 | 0.76 | 0.16 | 0.60 |
Chitinophagaceae | 1.4 | 1.3 | 2.4 | 1.6 | 0.5 | 0.81 | 0.15 | 0.76 |
Rikenellaceae | 2.6 | 1.9 | 0.5 | 0.3 | 0.6 | 0.42 | 0.01 | 0.008 |
Verrucomicrobia | 3,534 | 3,061 | 8,824 | 7,576 | 2,833 | 0.90 | 0.18 | 0.31 |
Verrucomicrobiaceae | 3,534 | 3,061 | 8,824 | 7,576 | 2,833 | 0.90 | 0.18 | 0.31 |
Tenericutes | 50 | 0 | 0 | 0 | 0 | <0.001 | <0.001 | <0.001 |
Anaeroplasmataceae | 50 | 0 | 0 | 0 | 0 | <0.001 | <0.001 | <0.001 |
Actinobacteria | 111 | 109 | 81 | 23 | 24 | 0.96 | 0.37 | 0.01 |
Coriobacteriaceae | 111 | 109 | 81 | 23 | 24 | 0.96 | 0.37 | 0.01 |
Proteobacteria | 18 | 24 | 60 | 36 | 11 | 0.67 | 0.008 | 0.25 |
Enterobacteriaceae | 4 | 6 | 31 | 10 | 8 | 0.87 | 0.02 | 0.62 |
Comamonadaceae | 3.3 | 3.4 | 6.6 | 5.7 | 1.5 | 0.94 | 0.11 | 0.25 |
Oxalobacteraceae | 2.4 | 3.8 | 5.1 | 4.1 | 1.0 | 0.33 | 0.06 | 0.23 |
Sphingomonadaceae | 2.3 | 3.1 | 3.8 | 3.9 | 0.7 | 0.46 | 0.14 | 0.13 |
Methylobacteriaceae | 0.1 | 0.1 | 0.8 | 1.0 | 0.4 | 1 | 0.21 | 0.14 |
Pseudomonas | 0.3 | 0.3 | 0.5 | 0.3 | 0.2 | 0.77 | 0.57 | 0.84 |
Phyla and families within phyla are organized in the order of microbial number.