Table 3.
CON | XN | DXN | TXN | SEM | XN vs CON | DXN vs CON | TXN vs CON | |
---|---|---|---|---|---|---|---|---|
Microbial Diversity ASV Number (Mice n with counts) | P-values (Comparisons) | |||||||
Total | 399 | 362 | 323 | 318 | 9 | 0.004 | <0.001 | <0.001 |
Firmicutes | 292 | 258 | 218 | 213 | 9 | 0.01 | <0.001 | <0.001 |
Lachnospiraceae | 161 | 142 | 121 | 119 | 4 | 0.003 | <0.001 | <0.001 |
Ruminococcaceae | 66 | 60 | 37 | 36 | 2.0 | 0.04 | <0.001 | <0.001 |
Erysipelotrichaceae | 39 | 37 | 46 | 46 | 2.9 | 0.60 | 0.10 | 0.11 |
Eubacteriaceae | 4.3 (12) | 2.8 (12) | 1.4 (12) | 1.6 (10) | 0.2 | <0.001 | <0.001 | <0.001 |
Peptostreptococcaceae | 3.7 (12) | 2.8 (11) | 2.1 (10) | 1.0 (6) | 0.4 | 0.17 | 0.01 | <0.001 |
Clostridiaceae | 1.2 (12) | 0.3 (4) | 0.25 (3) | 0.09 (1) | 0.1 | <0.001 | <0.001 | <0.001 |
Halobacteroidacea | 1.0 (12) | 1.0 (12) | 0.08 (1) | 0 (0) | 0.04 | 1 | <0.001 | <0.001 |
Lactobacillaceae | 1.0 (11) | 0.7 (8) | 0.4 (5) | 0.7 (8) | 0.1 | 0.09 | 0.005 | 0.18 |
Paenibacillaceae | 0.1 (1) | 0.5 (6) | 0.8 (9) | 0.8 (9) | 0.1 | 0.02 | <0.001 | <0.001 |
Natranaerovirga | 0.1 (1) | 0 (0) | 1.6 (11) | 0.4 (2) | 0.2 | 0.80 | <0.001 | 0.40 |
Enterococcaceae | 0.8 (9) | 0.7 (8) | 0.2 (2) | 0.7 (8) | 0.1 | 0.65 | 0.003 | 0.90 |
Staphylococcaceae | 0.7 (8) | 0.6 (7) | 0.6 (7) | 0.4 (4) | 0.1 | 0.69 | 0.69 | 0.16 |
Bacillaceae | 0.6 (6) | 0.8 (7) | 0.8 (7) | 0.6 (6) | 0.2 | 0.61 | 0.45 | 0.87 |
Bacteroidetes | 67.4 | 54.6 | 18.9 | 12.4 | 2.6 | <0.001 | <0.001 | <0.001 |
Porphyromonadaceae | 64.0 | 51.1 | 15.3 | 9.3 | 2.4 | <0.001 | <0.001 | <0.001 |
Flavobacteriaceae | 1.7 (10) | 1.8 (11) | 2.0 (12) | 1.6 (10) | 0.3 | 0.85 | 0.44 | 0.95 |
Chitinophagaceae | 0.8 (9) | 0.9 (9) | 1.3 (10) | 1.0 (6) | 0.2 | 0.80 | 0.22 | 0.63 |
Rikenellaceae | 0.8 (10) | 0.8 (9) | 0.4 (5) | 0.3 (3) | 0.1 | 0.66 | 0.03 | 0.005 |
Verrucomicrobia | 7.1 | 4.8 | 7.6 | 7.6 | 2.0 | 0.40 | 0.86 | 0.84 |
Verrucomicrobiaceae | 7.1 | 4.8 | 7.6 | 7.6 | 2.0 | 0.40 | 0.86 | 0.84 |
Tenericutes | 1 (12) | 0 (0) | 0 (0) | 0 (0) | 0 | <0.001 | <0.001 | <0.001 |
Anaeroplasmataceae | 1 (12) | 0 (0) | 0 (0) | 0 (0) | 0 | <0.001 | <0.001 | <0.001 |
Actinobacteria | 3.1 | 2.8 | 2.7 | 2.2 | 0.2 | 0.41 | 0.17 | 0.005 |
Coriobacteriaceae | 3.1 | 2.8 | 2.6 | 2.1 | 0.2 | 0.25 | 0.09 | 0.002 |
Proteobacteria | 9.1 | 10.1 | 12.2 | 12.2 | 1.2 | 0.53 | 0.06 | 0.06 |
Enterobacteriaceae | 2.3 (12) | 2.5 (11) | 3.8 (11) | 3.0 (10) | 0.4 | 0.76 | 0.01 | 0.24 |
Comamonadaceae | 1.3 (11) | 1.2 (12) | 1.3 (12) | 1.2 (10) | 0.2 | 0.45 | 0.70 | 0.50 |
Oxalobacteraceae | 2.0 (12) | 2.1 (11) | 2.3 (11) | 2.3 (10) | 0.4 | 0.87 | 0.51 | 0.59 |
Sphingomonadaceae | 1.4 (10) | 1.8 (11) | 2.0 (10) | 2.5 (10) | 0.3 | 0.33 | 0.17 | 0.02 |
Methylobacteriaceae | 0.1 (1) | 0.1 (1) | 0.4 (5) | 0.2 (2) | 0.1 | 1 | 0.04 | 0.54 |
Pseudomonas | 0.3 (4) | 0.3 (3) | 0.3 (3) | 0.3 (3) | 0.1 | 0.66 | 0.66 | 0.76 |
phyla and families within phyla are organized in the order of microbial number; mice with counts are not shown for phyla and families, who have counts for all mice.