Table 2.
Selection signals in the mitogenomes of Gammarus lacustris (GL) and Gammarus pisinnus (GP) inferred using BUSTED, aBSREL and RELAX algorithms. 13PCG is the dataset comprising all 13 concatenated (non-partitioned) protein-coding genes. Sites column shows the number of sites in the alignment. K column: a statistically significant K > 1 indicates that selection strength has been intensified, and K < 1 that selection strength has been relaxed. LR is likelihood ratio, p is p-value and D indicates the direction of selection pressure change: intensified (I) or relaxed (R), where * highlights a statistically significant (p < 0.05) result.
| data | sites |
Gammarus lacustris (GL) |
Gammarus pisinnus (GP) |
||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| BUSTED | aBSREL | RELAX |
BUSTED | aBSREL | RELAX |
||||||||
| p-value | p-value | K | LR | p-value | D | p-value | p-value | K | LR | p-value | D | ||
| 13PCG | 3743 | 0.024* | 0.005* | 1.21 | 11.54 | 0.001 | I* | 0.001* | 0.010* | 0.63 | 56.39 | 0.000 | R* |
| atp6 | 223 | 1.000 | 1.000 | 14.80 | 7.48 | 0.006 | I* | 0.487 | 1.000 | 0.68 | 1.51 | 0.219 | R |
| atp8 | 58 | 1.000 | 1.000 | 1.02 | 0.02 | 0.897 | I | 0.000* | 0.004* | 0.13 | 1.14 | 0.286 | R |
| cox1 | 527 | 1.000 | 1.000 | 1.87 | 12.31 | 0.000 | I* | 1.000 | 1.000 | 1.00 | −0.38 | 1.000 | I |
| cox2 | 231 | 1.000 | 1.000 | 1.60 | 2.76 | 0.097 | I | 1.000 | 1.000 | 1.00 | 0.00 | 1.000 | R |
| cox3 | 262 | 0.345 | 0.087 | 2.24 | 8.05 | 0.005 | I* | 0.327 | 0.144 | 0.45 | −6.96 | 1.000 | R |
| cytb | 380 | 1.000 | 0.168 | 2.37 | 6.63 | 0.010 | I* | 1.000 | 1.000 | 0.46 | 7.91 | 0.005 | R* |
| nad1 | 313 | 1.000 | 1.000 | 1.18 | 0.90 | 0.343 | I | 0.749 | 1.000 | 0.77 | 3.24 | 0.072 | R |
| nad2 | 330 | 0.718 | 1.000 | 1.01 | 0.37 | 0.543 | I | 0.562 | 0.431 | 0.84 | 0.42 | 0.516 | R |
| nad3 | 119 | 1.000 | 1.000 | 7.91 | 6.98 | 0.008 | I* | 0.049* | 0.454 | 0.64 | 2.28 | 0.131 | R |
| nad4 | 447 | 1.000 | 1.000 | 1.04 | 0.40 | 0.530 | I | 1.000 | 1.000 | 0.58 | 7.75 | 0.005 | R* |
| nad4 L | 98 | 1.000 | 1.000 | 0.36 | 4.98 | 0.026 | R* | 1.000 | 1.000 | 2.05 | 2.61 | 0.106 | I |
| nad5 | 579 | 0.741 | 0.385 | 1.38 | 4.23 | 0.040 | I* | 0.460 | 0.500 | 2.15 | −45.82 | 1.000 | I |
| nad6 | 176 | 0.766 | 0.500 | 0.95 | −0.09 | 1.000 | R | 1.000 | 1.000 | 0.49 | 4.41 | 0.036 | R* |