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. 2020 Feb 19;10:2988. doi: 10.1038/s41598-020-59937-w

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© The Author(s) 2020

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Diversity and similarity of bacteria present in CD14⁺CD11c⁺ macrophage of lamina propria and mucus from Crohn’s disease patients. (a) The OTU richness and Shannon Diversity Index of bacteria present in CD14⁺CD11c⁺ macrophage and mucus. OTU richness represents the number of OTUs in each sample. The Shannon Diversity Index takes into account the richness and evenness of OTUs within samples. (b) Weighted principal coordinates analysis of microbiome samples of CD14⁺CD11c⁺ macrophage and mucus. This analysis uses the sample-to-sample dissimilarity values to position the points relative to each other by maximizing the linear correlation between the dissimilarity values and the plot distances.