Table 4.

List of EMC meiosis-related differentially expressed lncRNAs in the autotetraploid rice

DEL-EMC	Regulation	Targets	Annotation	Regulation	small RNAs precursors	Transposable elements	Reference
TCONS_00019924	up	LOC_Os05g06460	dihydrolipoyl dehydrogenase, putative, expressed	down		Class I and Class II	Kubo et al. [34]
TCONS_00023646	down	LOC_Os01g67850	zinc finger, RING-type, putative, expressed	down		Class I and Class II	Wu et al. [35]
TCONS_00037710	down	LOC_Os06g44300	WAX2, putative, expressed	down		Class II	Kubo et al. [34]
TCONS_00115107	down	LOC_Os01g08560	DnaK family protein, putative, expressed	down		Class II	Kubo et al. [34]
TCONS_00121908	down	LOC_Os02g46460	peptide transporter PTR2, putative, expressed	down		Class II	Wu et al. [35]
	down	LOC_Os06g12740	expressed protein	down		Class II	Kubo et al. [34]
	down	LOC_Os08g45170	carboxyl-terminal peptidase, putative, expressed	down		Class II	Kubo et al. [34]
TCONS_00134306	down	LOC_Os02g41630	phenylalanine ammonia-lyase, putative, expressed	down		Class I and Class II	Kubo et al. [34]
TCONS_00144592	down	LOC_Os03g15960	hsp20/alpha crystallin family protein, putative, expressed	down		Class II	Kubo et al. [34]
	down	LOC_Os12g39420	nucleobase-ascorbate transporter, putative, expressed	down		Class II	Kubo et al. [34]

Up: up-regulated in autotetraploid rice

Down: down-regulated in autotetraploid rice

Small RNAs precursors: DEL serves as miRNAs/phasiRNAs precursors

Class I: Retrotransposons; Class II: DNA Transposons