| Software and Algorithms |
| MATLAB2015a |
The MathWorks |
RRID:SCR_001622 |
| DSLstudio |
Fang-Chen Yeh, DSLstudio |
RRID: SCR_009557; dsi-studio.labsolver.org/
|
| Connectome Workbench |
Marcus et al., 2011 |
RRID:SCR_008750; https://www.humanconnectome.org/software/get-connectome-workbench
|
| Freesurfer |
Dale et al., 1999 |
RRID: SCR_001847;
http://surfer.nmr.mgh.harvard.edu/
|
| Brain Connectivity Toolbox |
Rubinov and Sporns, 2010 |
RRID:SCR_004841;
http://sites.google.com/site/bctnet/
|
| GRETNA |
NITRC |
RRID: SCR_009487;
https://www.nitrc.org/projects/gretna/
|
| Analyze |
Robb and Hanson, 1991 |
RRID: SCR_005988;
https://analyzedirect.com/analyze-12-0/
|
| Surflce |
NITRC |
https://www.nitrc.org/projects/surfice |
| MRICroGL |
NITRC |
https://www.nitrc.org/projects/mricrogl |
| 4dfp_tools |
NIL |
ftp://imaging.wustl.edu/pub/raichlab/4dfp_tools/ |
| paq |
Herve Abdi |
https://www.utdallas.edu/~herve/ |
| plotSpread |
MATLAB Central |
https://www.mathworks.com/matlabcentral/fileexchange/37105-plot-spread-points-beeswarm-plot |
| matlab_nifti |
MATLAB Central |
RRID:SCR_016895;
https://www.mathworks.com/matlabcentral/fileexchange/8797-tools-for-nifti-and-analyze-image
|
| Other |
| Gordon rsfMRI parcellation |
Gordon et al., 2016 |
https://sites.wustl.edu/petersenschlaggarlab/resources/ |
| AAL Atlas |
Tzourio-Mazoyer et al., 2002 |
RRID:SCR_003550;
http://www.gin.cnrs.fr/en/tools/aal-aal2/
|
| Harvard-Oxford Subcortical Atlas |
Harvard Center for Morphometric Analysis |
RRID:SCR_001476; https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/Atlases
|
| HCP-842 Diffusion MRI Tractography Atlas |
Yeh et al., 2018 |
brain.labsolver.org/diffusion-mri-templates/tractography |
