Table 1.
Genome sequences of Panax species
| Species | P. ginseng | P. ginseng | P. notoginseng | P. notoginseng | P. notoginseng |
|---|---|---|---|---|---|
| Ploidy | Tetra | Tetra | Di | Di | Di |
| Assembled genome size | 3.5 Gb | 3.12 Gb | 2.39 Gb | 1.85 Gb | 2.36 Gb |
| Genome size estimated (Flow Cytometry/k-mer) | 3.5 | 3.3-3.6 | 2.31 | 2.0 - 2.1 | NA |
| Cultivar/line/cultivation | IR826 | Chunpoong | Green House | Mountain | NA |
| Plant age | 4 yrs (leaves) | 4 yrs (leaves) | NA (leaves) | NA (leaves) | NA |
| Sequencing method(s) | Illumina | Illumina, | Illumina | Illumina | Illumina, |
| Pacbio | Pacbio | ||||
| Raw data size | 391.46 | 1,111 | 1837.6 | 385.28 | 269.07 |
| Scaffolds | 83,074 | 9,845 | 122,131 | 76,517 | 179,913 |
| Total bases | 3,414,349,854 | 2,984,993,682 | 2,394,283,436 | 1,849,578,873 | 2,359,971,642 |
| N50 | 108,708 | 567,017 | 96,155 | 157,811 | 72,374 |
| Gaps | 12.15% | 8.11% | 18.15% | 17.14% | NA |
| Genes/proteins | 42,006 | 59,352 | 36,790 | 34,369 | 35,451 |
| Repeat content in genome | 60% | 79.50% | 75.94% | 61.31% | 51.03% |
| Long terminal repeats | 83.50% | 49% | 66.72% | 95.10% | 90.31 |
| Journal | Giga | Plant Biotechnology | Molecular Plant | Molecular Plant | Revix |
| Science | |||||
| Year | 2017 | 2018 | 2017 | 2017 | 2018 |