Table 2.
Summary of telomeric SMN1, exons 7 and 8 and centromeric SMN2, exons 7 and 8 copy number across various patient and control groups.
Genotype | Definition of genotype | Copy number | Telomeric SMN region | Centromeric SMN region | ||
---|---|---|---|---|---|---|
SMN1, exon 7 | SMN1, exon 8 | SMN2, exon 7 | SMN2, exon 8 | |||
N/Nb (n = 122) |
Negative black controls | 0 | 0 (0%) | 1 (0.8%) | 15 (12.3%) | 33 (27%) |
1 | 0 (0%) | 0 (0%) | 20 (16.4%) | 55 (45.1%) | ||
2 | 60 (49.2%) | 54 (44.3%) | 73 (59.8%) | 31 (25.4%) | ||
>2 | 62 (50.8%) | 67 (54.9%) | 14 (11.5%) | 3 (2.5%) | ||
N/Nw (n = 30) |
Negative white controls | 0 | 0 (0%) | 0 (0%) | 2 (6.7%) | 2 (6.7%) |
1 | 0 (0%) | 0 (0%) | 8 (26.6%) | 12 (40%) | ||
2 | 29 (96.7%) | 28 (93.3%) | 18 (60%) | 14 (46.6%) | ||
>2 | 1 (3.3%) | 2 (6.7%) | 2 (6.7%) | 2 (6.7%) | ||
M1/M1b (n = 75) |
Black patients with homozygous SMN1, exon 7 deletion (Mutation 1) | 0 | 75 (100%) | 38 (50.7%) | 0 (0%) | 8 (10.7%) |
1 | 0 (0%) | 22 (29.3%) | 4 (5.3%) | 15 (20%) | ||
2 | 0 (0%) | 12 (16%) | 63 (84%) | 49 (65.3%) | ||
>2 | 0 (0%) | 3 (4%) | 8 (10.7%) | 3 (4%) | ||
M1/M1w (n = 30) |
White patients with homozygous SMN1, exon 7 deletion (Mutation 1) | 0 | 30 (100%) | 24 (80%) | 0 (0%) | 0 (0%) |
1 | 0 (0%) | 4 (13.3%) | 2 (6.7%) | 5 (16.7%) | ||
2 | 0 (0%) | 2 (6.7%) | 17 (56.7%) | 13 (43.3%) | ||
>2 | 0 (0%) | 0 (0%) | 11 (36.7%) | 12 (40%) | ||
M2/M2b (n = 50) |
Black patients with homozygous SMN2, exon 7 deletion (Mutation 2) | 0 | 0 (0%) | 0 (0%) | 50 (100%) | 49 (98%) |
1 | 2 (4%) | 0 (0%) | 0 (0%) | 1 (2%) | ||
2 | 16 (32%) | 21 (42%) | 0 (0%) | 0 (0%) | ||
>2 | 32 (64%) | 29 (58%) | 0 (0%) | 0 (0%) | ||
M2/M2w (n = 8) |
White patients with homozygous SMN2, exon 7 deletion (Mutation 2) | 0 | 0 (0%) | 0 (0%) | 8 (100%) | 8 (100%) |
1 | 0 (0%) | 0 (0%) | 0 (0%) | 0 (0%) | ||
2 | 5 (62.5%) | 5 (62.5%) | 0 (0%) | 0 (0%) | ||
>2 | 3 (37.5%) | 3 (37.5%) | 0 (0%) | 0 (0%) | ||
U/Ub (n = 72) |
Black patients clinically suggestive of SMA and negative for a homozygous deletion of SMN1, exon 7 (unknown) | 0 | 0 (0%) | 0 (0%) | 10 (13.9%) | 17 (23.6%) |
1 | 6 (8.3%) | 5 (6.9%) | 8 (11.1%) | 33 (45.8%) | ||
2 | 38 (52.8%) | 31 (43.1%) | 51 (70.8%) | 19 (26.4%) | ||
>2 | 28 (38.9%) | 36 (50%) | 3 (4.2%) | 3 (4.2%) |