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. 2020 Feb 21;15(2):e0228116. doi: 10.1371/journal.pone.0228116

Fig 3. Phylogeny and multiple alignments of B. anthracis strains belonging to A.Br.008/011 and A.Br.011/009 canSNP lineages.

Fig 3

A total of 4,976 core genome chromosomal SNPs (S3 Table) from 82 strains were extracted using Parsnp. (A) The phylogenetic tree and SNP heatmap showing SNP density across the genome of each strain of the A.Br.008/011 and A.Br.011/009 canSNP lineages used in the present study. The Ames Ancestor strain was used as a reference and an outgroup. (B) The phylogenetic tree and SNP heatmap of TEA group strains and Vietnamese strains. Screenshots of the phylogenic tree and SNP heatmap were obtained as output by Gingr.