Antibodies |
|
Donkey anti-goat secondary antibody, alexa fluor 1488 |
Invitrogen |
Cat#A-11055; RRID:AB_142672 |
Donkey anti-goat secondary antibody, alexa fluor 555 |
Invitrogen |
Cat#A-21432; RRID:AB_141788 |
Donkey anti-goat secondary antibody, alexa fluor 647 |
Invitrogen |
Cat#A-21447; RRID:AB_141844 |
Donkey anti-rat secondary antibody, alexa fluor 488 |
Invitrogen |
Cat#A-21208; RRID:AB_141709 |
Donkey anti-rat secondary antibody, DyLight 550 |
Invitrogen |
Cat#SA5-10027 RRID:AB_2556607 |
Donkey anti-rabbit secondary antibody, alexa fluor 555 |
Invitrogen |
Cat#A-31572; RRID:AB_162543 |
Donkey anti-mouse secondary antibody, alexa fluor 647 |
Invitrogen |
Cat#A-31571; RRID:AB_162542 |
APC anti-mouse CD31 monoclonal antibody |
BioLegend |
Clone#: MEC13.3; Cat#102510; RRID:AB_312917 |
FITC anti-mouse CD31 monoclonal antibody |
BioLegend |
Clone#: MEC 13.3; Cat#102506, RRID:AB_312913 |
CD31 monoclonal antibody, PE-Cyanine7 |
eBioscience, Thermo Fisher Scientific |
Clone#: 390; Cat#25-0311-81; RRID:AB_2734962 |
APC anti-mouse CD45 monoclonal antibody |
BioLegend |
Clone#: 30-F11; Cat#103112; RRID:AB_312977 |
FITC anti-mouse CD45 monoclonal antibody |
BioLegend |
Clone#: 30-F11; Cat#103108; RRID:AB_312973 |
Pacific Blue anti-mouse Sca-1 monoclonal antibody |
BioLegend |
Clone#: D7 Cat#108120; RRID:AB_493273 |
PE/Cy7 anti-mouse VCAM-1 monoclonal antibody |
BioLegend |
Clone#: 429 (MVCAM.A); Cat#105719; RRID:AB_2214047 |
APC rat IgG2a, Isotype control monoclonal antibody |
BioLegend |
Clone#: RTK2758; Cat#400511 |
FITC rat IgG2a, Isotype control monoclonal antibody |
BioLegend |
Clone#: RTK2758; Cat#400505; RRID:AB_2736919 |
Pacific Blue rat IgG2a, Isotype control monoclonal antibody |
BioLegend |
Clone#: RTK2758; Cat#400527 |
Mouse PDGF R alpha polyclonal antibody |
R&D Systems |
Cat#AF1062; RRID:AB_2236897 |
Anti-Laminin 2 alpha monoclonal antibody |
Abcam |
Clone#: 4H8-2 Cat#ab11576, RRID:AB_298180 |
Anti-Laminin polyclonal antibody |
Sigma-Aldrich |
Cat#L9393, RRID:AB_477163 |
TCF4 polyclonal antibody |
Novus |
Cat#NBP1-88633 RRID:AB_11021504 |
GAPDH monoclonal antibody |
Novus |
Cione:1D4 Cat#NB300-221; RRID:AB_10077627 |
|
Chemicals, Peptides, and Recombinant Proteins |
|
Tamoxifen |
Sigma |
Cat#T5648-5G |
Endoxifen Hydrochloride Hydrate |
Sigma |
Cat#E8284-25MG |
Polycaprolactone |
Sigma-Aldrich |
Cat#440752-250G |
Methoxypolyethylene glycol 350 |
Sigma-Aldrich |
Cat#M6768-250G |
BaCl2
|
Sigma-Aldrich |
Cat#B-0750 |
|
Critical Commercial Assays |
|
Standard Single-Cell West Kit |
Protein Simple |
K600 |
Small Single-Cell West Kit |
Protein Simple |
K500 |
|
Deposited Data |
|
Tabula Muris Consortium Single Celi Droplet RNA Sequencing |
Tabula Muris Consortium, 2018 |
https://figshare.com/articies/Singie-ceii_RNA-seq_data_from_microfluidic_emuision_v2_/5968960 |
|
Experimental Models: Cell Lines |
|
Mouse 3T3 Fibroblasts |
ATCC |
CRL-1658 |
|
Experimental Models: Organisms/Strains |
|
PDGFRαCreER/+
|
This paper |
NA |
R26NG
|
See derivation in methods; Yamamoto et al., 2009
|
NA |
R26NZG
|
The Jackson Laboratory; Yamamoto et al., 2009
|
Jax stock # 012429 |
R26Flp
|
The Jackson Laboratory; Farley et al., 2000
|
Jax stock # 009086 |
R26DTA
|
The Jackson Laboratory; Voehringer et al., 2008
|
Jax stock # 009669 |
NSG |
The Jackson Laboratory; Shultz et al., 2005
|
Jax stock # 005557 |
UBC-GFP |
The Jackson Laboratory; Schaefer et al., 2001
|
Jax stock # 004353 |
|
Oligonucleotides |
|
Primer sequences |
See Table S1
|
N/A |
SMARTpool: ON-TARGETplus Mouse Tcf4 siRNA |
Dharmacon |
#L-043160-02 |
SMARTpool: ON-TARGETplus Non-targeting siRNA |
Dharmacon |
#D-001810-10 |
|
Software and Algorithms |
|
R software package Seurat |
Butler et al., 2018 |
https://satijalab.org/seurat/ |
BD FACSDiva 8.0 |
BD Biosciences |
N/A |
BZ-X Viewer version 01.03.00.05 |
Keyence Corporation |
N/A |
BZ-X Analyzer version 1.3.0.3 |
Keyence Corporation |
N/A |
Improvision Volocity 6.3.0 |
Perkin Elmer |
N/A |
QDR 12 |
Hologic, Inc |
N/A |
Scout 2.0.5 |
ProteinSimple |
https://www.proteinsimple.com/scout/downloads/ |
GIMP 2.8 |
N/A |
https://www.gimp.org |
ImageJ |
N/A |
https://imagej.nih.gov/ij/ |
Prism 7 |
GraphPad Software, Inc |
N/A |