Table 2.
QTLs linked to Fusarium culmorum crown rot under growth room and greenhouse.
| a) growth room | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SN | Marker | CHR | POS (cM) | MAF | Genetic region | P-LOD | P-FDR | Probability | Allele | Effect (R²) | Heritability (H²) | SE of H² |
| 1 | Kukri_c57491_156 | 2AL | 104,13 | 0,47 | 104,13 | 12,33 | 4,60172E-09 | 4,70283E-13 | T/C | 6,93 | 0,96 | P < 0.001 |
| 2 | wsnp_Ra_c16278_24893033 | 3AS | 83,85 | 0,36 | 83.31–83.85 | 9,70 | 1,95925E-07 | 2,0023E-10 | A/G | 5,87 | ||
| 3 | wsnp_Ku_c12399_20037334 | 4BS | 6,78 | 0,30 | 6,77 | 9,61 | 2,20756E-07 | 2,48167E-10 | T/G | 7,07 | ||
| 4 | wsnp_Ku_c17875_27051169 | 5BS | 55,52 | 0,43 | 55.52–55.52 | 11,64 | 1,11631E-08 | 2,28168E-12 | T/C | 9,11 | ||
| 5 | RAC875_rep_c111521_246 | 5DS | 67,49 | 0,06 | 67.49–67.50 | 10,53 | 7,22785E-08 | 2,95466E-11 | T/G | 5,47 | ||
| 6 | Excalibur_c2795_1518 | 5DL | 198,19 | 0,41 | 198,18 | 9,01 | 6,38067E-07 | 9,78131E-10 | T/C | 7,52 | ||
| 7 | BS00021881_51 | 6DS | 98,11 | 0,45 | 98,10 | 9,45 | 2,86754E-07 | 3,51665E-10 | A/G | 6,13 | ||
| Sum | 48,09 | |||||||||||
| b) greenhouse | ||||||||||||
| 1 | CAP8_c1393_327 | 3AS | 90,55 | 0,44 | 90,55 | 9,39 | 5,57516E-07 | 4,08865E-10 | A/G | 7,19 | 0,91 | P < 0.001 |
| 2 | CAP12_rep_c3868_270 | 3BS | 5,86 | 0,28 | 5,85 | 8,35 | 4,71367E-06 | 4,44453E-09 | T/G | 7,82 | ||
| 3 | wsnp_Ex_c14027_21925404 | 3DL | 143,01 | 0,23 | 143,01 | 15,42 | 3,64073E-12 | 3,81428E-16 | T/C | 11,22 | ||
| 4 | tplb0045c06_1675 | 4BS | 34,15 | 0,06 | 34,14 | 7,24 | 3,2349E-05 | 5,76147E-08 | T/C | 6,05 | ||
| 5 | RAC875_rep_c72961_977 | 4BS | 75,65 | 0,20 | 75,64 | 6,56 | 0,000104516 | 2,73745E-07 | T/C | 6,24 | ||
| 6 | Excalibur_c23304_353 | 5BS | 95,43 | 0,20 | 95.43–95.44 | 9,81 | 2,487E-07 | 1,56333E-10 | T/G | 9,44 | ||
| 7 | RAC875_c17297_341 | 6BS | 58,20 | 0,27 | 58.19–58.20 | 10,06 | 1,66294E-07 | 8,71105E-11 | T/C | 5,80 | ||
| 8 | BobWhite_c19298_97 | 6BL | 122,26 | 0,21 | 122,25 | 6,75 | 7,64241E-05 | 1,76148E-07 | T/C | 5,73 | ||
| Sum | 59,48 | |||||||||||
*CHR chromosomes, POS position, cM centi Morgan, MAF marker allele frequency, FDR false discovery rate, R² explained genetic variation, SE standard error, markers in bold reprent the QTLs located on same chromosomes.