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. 2020 Feb 21;10:3200. doi: 10.1038/s41598-020-60190-4

Table 3.

Epistasis interaction linked to Fusarium culmorum crown rot under growth room and greenhouse.

a) growth room
SN Marker_1 (M1) CHR POS (cM) Marker_2 (M2) CHR POS (cM) P-LOD P-FDR Prob_F Allele (M1*M2) Effect ()
1 Ex_c3201_1046 1AL 139,74 wsnp_Ku_c12399_20037334 4BS 6,78 19,78 8,00863E-20 1,65228E-20 (T/C)*(T/C) 12,24
2 BS00022896_51 2 AS 109,52 wsnp_Ra_c63822_63288359 7AS 56,49 19,78 2,95702E-33 1,65228E-20 (T/C)*(T/C) 15,75
3 Excalibur_c2795_1518 5DL 198,19 Tdurum_contig55097_601 5AS 89,56 17,77 4,91127E-18 1,70502E-18 (T/C)*(T/C) 12,95
4 BS00021881_51 6DS 98,11 BS00040933_51 5AS 36,73 35,72 1,11928E-22 1,90877E-36 (A/G)*(A/G) 16,14
5 RFL_Contig2200_1024 7AL 120,68 Tdurum_contig43252_1762 3BS 37,29 23,05 6,88739E-16 8,89671E-24 (T/C)*(T/G) 12,01
Sum 69,09
b) greenhouse
1 Excalibur_c7282_285 2AL 122,54 Kukri_c45876_157 6BL 120,61 14,51 2,28164E-14 3,1055E-15 (T/C)*(T/C) 9,64
2 Kukri_c22553_60 2DS 73,20 Tdurum_contig32437_257 1AS 81,51 15,98 1,35877E-15 1,04787E-16 (T/C)*(A/G) 13,34
3 Kukri_c40909_784 3BS 65,72 wsnp_Ex_c6400_11123059 2DS 38,25 12,90 5,23841E-13 1,26144E-13 (T/C)*(A/G) 11,70
4 Excalibur_c18318_701 4BS 32,66 Excalibur_c7241_284 2AL 143,22 17,33 9,65719E-17 4,65109E-18 (A/G)*(A/G) 11,62
5 RAC875_rep_c72961_977 4BS 75,65 wsnp_Ex_c14027_21925404 3DL 143,01 32,41 1,52315E-29 3,88956E-33 (T/C)*(T/C) 20,11
Sum 66,42

*CHR chromosomes, POS position, cM centi Morgan, F-value epistatis fischer test value, Prob probability, FDR false discovery rate, explained genetic variation, all epistatic interactions were significant at P < 0.001, markers in bold represent QTLs with main effects.