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. 2020 Feb 21;10:3180. doi: 10.1038/s41598-020-59880-w

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© The Author(s) 2020

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Maximum likelihood phylogenetic trees for YFV, with bootstrap values shown for major branches. (a) 216 prM/E gene sequences (b) 2018 Nigerian YFV whole genome sequences and the West African whole genome sequences with which they most closely cluster. ID numbers for 2018 Nigerian sequences correspond to those given in Fig. 2; GenBank accession numbers are listed in Supplemental Table 1. Scale bars are in units substitutions per site. Trees were inferred using IQTREE and FigTree was used to view and annotate the trees. Cosmetic adjustments were made in Adobe Illustrator CC.