Table 3.

Correlation (R) and concordance rates (CR) between imputed and true genotypes for Alpine and Saanen breeds using different reference populations

Reference population	Pedigree	Alpine			Saanen
		R	genotype CR	allele CR	R	genotype CR	allele CR
Within-breed	Yes	0.264	0.755	0.867	0.239	0.741	0.859
World	Yes	0.232	0.723	0.850	0.226	0.714	0.845
Europe	Yes	0.264	0.747	0.863	0.251	0.733	0.856
France	Yes	0.265	0.749	0.864	0.248	0.734	0.856
	No	0.211	0.734	0.856	0.198	0.719	0.847