Table 4.

Number of significant variants identified at the chromosome significance level in a population of 483 Saanen and 629 Alpine individuals for both imputation scenarios

	Alpine				Saanen
Imputation	Within-breed1		French goats2		Within-breed3		French goats4
	sequence	50 k	sequence	50 k	sequence	50 k	sequence	50 k
milk yield	3	0	9	0	313	14	448	12
number of spermatozoa	0	0	1	0	5	1	51	1
semen concentration	2	0	2	0	2	0	8	0
semen volume	2	2	2	0	415	11	981	9

Bonferroni thresholds: ¹ p − value ≤ 1.22 ∗ 10^{−7 2} p − value ≤ 9.87 ∗ 10^{−8 3} p − value ≤ 1.17 ∗ 10^{−7 4} p − value ≤ 9.41 ∗ 10⁻⁸