Table 2.
Experimentally Mapped Peptides and Computationally Predicted Epitopes
| ID | Participant’s HLA Types | Hit No | Screening Peptide | Screening Peptide HIV-1 Clade | NetMHCpan4.0 9-mer Epitope Prediction | NetMHCpan4.0 9-mer HLA Prediction | NetMHCpan4.0% Rank | MHCflurry 9-mer Epitope prediction | MHCflurry 9-mer HLA prediction | MHCflurry affinity (μm) | NetCTL 9-mer Epitope prediction |
|---|---|---|---|---|---|---|---|---|---|---|---|
| E91 | A*02:01 | 1 | FITKGLGISYGRKKRRQR | D | GLGISYGRK | A*0301 | 0.50 | GLGISYGRK | A*0201 | 0.47 | |
| A*03:01 | 2 | HPKVSSEVHIPLGDARLV | A1 | IPLGDARLV | B*53:01 | 0.70 | IPLGDARLV | A*0302 | 24.63 | ||
| B*53:01 | HPKVSSEVHIPLGDARLV | A1 | KVSSEVHIP | B*58:02 | 0.60 | KVSSEVHIP | B*53:01 | 26.18 | |||
| B*58:02 | HPKVSSEVHIPLGDARLV | A1 | SSEVHIPLG | B*58:02 | 0.60 | ||||||
| Cw*04:01 | HPKVSSEVHIPLGDARLV | A1 | VSSEVHIPL | Cw*04:01 | 0.90 | VSSEVHIPL | Cw*04:01 | 18.48 | |||
| Cw*06:02 | HPKVSSEVHIPLGDARLV | A1 | HPKVSSEVH | B*53:01 | 1.20 | HPKVSSEVH | Cw*06:02 | 28.58 | |||
| E92 | A*02:01 | 3 | RKQNPEIVIYQYMDDLYV | D | YQYMDDLYV | A*02:01 | 0.15 | YQYMDDLYV | A*02:01 | 0.25 | |
| A*30:02 | RKQNPEIVIYQYMDDLYV | D | NPEIVIYQY | B*44:03 | 0.60 | NPEIVIYQY | A*30:02 | 4.94 | |||
| B*44:03 | RKQNPEIVIYQYMDDLYV | D | YQYMDDLYV | A*02:01 | 1.80 | YQYMDDLYV | B*44:03 | 8.44 | |||
| B*14:02 | RKQNPEIVIYQYMDDLYV | D | YQYMDDLYV | Cw*04:01 | 0.90 | YQYMDDLYV | Cw*04:01 | 1.52 | |||
| Cw*04:01 | RKQNPEIVIYQYMDDLYV | D | YQYMDDLYV | Cw*08:02 | 1.20 | YQYMDDLYV | Cw*08:02 | 13.26 | |||
| Cw*08:02 | RKQNPEIVIYQYMDDLYV | D | VIYQYMDDL | A*30:02 | 0.60 | VIYQYMDDL | A*30:02 | 2.52 | |||
| 4 | ELNKRTQDFWEVQLGIPH | A1 | TQDFWEVQL | Cw*08:02 | 0.40 | YQYMDDLYV | Cw*08:02 | 3.09 | |||
| ELNKRTQDFWEVQLGIPH | A1 | TQDFWEVQL | A*02:01 | 0.03 | TQDFWEVQL | A*02:01 | 19.72 | ||||
| ELNKRTQDFWEVQLGIPH | A1 | TQDFWEVQL | Cw*08:02 | 1.50 | TQDFWEVQL | Cw*08:02 | 3.09 | ||||
| ELNKRTQDFWEVQLGIPH | A1 | ELNKRTQDF | B*44:03 | 0.60 | ELNKRTQDF | B*44:03 | 26.56 | ||||
| 5 | NDIQKLVGKLNWASQIYP | D | KLNWASQIY | A*30:02 | 0.50 | KLNWASQIY | A*30:02 | 0.02 | |||
| NDIQKLVGKLNWASQIYP | D | KLVGKLNWA | A*02:01 | 0.47 | KLVGKLNWA | A*02:01 | 0.32 | ||||
| NDIQKLVGKLNWASQIYP | D | KLNWASQIY | Cw*04:01 | 1.80 | KLNWASQIY | Cw*04:01 | 2.34 | ||||
| 6 | PAIQTGSEELRSLYNTVA | D | GSEELRSLY | A*30:02 | 0.40 | GSEELRSLY | A*30:02 | 0.12 | |||
| PAIQTGSEELRSLYNTVA | D | SEELRSLY | B*44:03 | 0.50 | SEELRSLY | B*44:03 | 16.25 | ||||
| 7 | PYNTPIFAIKKKDSTKWR | A1 | PYNTPIFAI | Cw*04:01 | 1.14 | PYNTPIFAI | Cw*04:01 | 32.80 | |||
| 8 | GANNSHNETFRPGGGDMR | D | TFRPGGGDM | Cw*04:01 | 1.60 | TFRPGGGDM | Cw*04:01 | 1.15 | |||
| 9 | GMDGPKVKQWPLTEEKIK | A1 | MDGPKVKQW | B*44:03 | 0.50 | MDGPKVKQW | B*44:03 | 1.37 | |||
| 10 | PLTSLKSLFGNDPLSQ | D | KSLFGNDPL | A*02:01 | 1.40 | KSLFGNDPL | A*02:01 | 31.04 | |||
| PLTSLKSLFGNDPLSQ | D | KSLFGNDPL | Cw*08:02 | 1.20 | |||||||
| FKGPRKIIKCFNCGKEGHI | D | ||||||||||
| 11 | HERIEVKDTKEALEKI | D | EVKDTKEAL | B*14:02 | 1.40 | ||||||
| HERIEVKDTKEALEKI | D | IEVKDTKEA | B*44:03 | 1.99 | IEVKDTKEA | B*44:03 | 13.12 | ||||
| E94 | A*34:02 | 12 | KIEEIQNKSKQKTQQAAA | A1 | EIQNKSKQK | A*34:02 | 1.03 | EIQNKSKQK | B*44:03 | 35.84 | |
| A*74:01 | 13 | NHPSCVWLEAQEEEEVGF | A1 | LEAQEEEEV | B*44:15 | 1.70 | LEAQEEEEV | B*44:04 | 12.09 | LEAQEEEEV | |
| B*44:03 | 14 | HQDPIPKQPSSQPRGD | D | HQDPIPKQP | Cw*04:01 | 0.60 | HQDPIPKQP | Cw*04:01 | 7.89 | ||
| B*58:02 | LEAQEEEEV | Cw*06:02 | 8.72 | ||||||||
| Cw*04:01 | |||||||||||
| Cw*06:02 | |||||||||||
| E95 | A*23:01 | 15 | VAVHVASGYIEAEVIPA | A1 | VAVHVASGY | Cw*16:01 | 1.50 | VAVHVASGY | A*23:01 | 30.27 | |
| A*74:01 | 17 | KRWIILGLNKIVRMYSPV | A1 | WIILGLNKI | A*23:01 | 0.60 | WIILGLNKI | A*23:01 | 6.99 | ||
| B*44:03 | 16 | KRWIILGLNKIVRMYSPV | A1 | IILGLNKIV | A*74:01 | 0.60 | IILGLNKIV | B*44:03 | 28.76 | ||
| B*15:10 | 17 | NMMLNIVGGHQAAMQMLK | A1 | HQAAMQMLK | B*15:10 | 0.17 | HQAAMQMLK | ||||
| Cw*04:01 | NMMLNIVGGHQAAMQMLK | A1 | HQAAMQMLK | A*74:01 | 0.90 | ||||||
| Cw*16:01 | NMMLNIVGGHQAAMQMLK | A1 | HQAAMQMLK | Cw*04:01 | 1.30 | HQAAMQMLK | Cw*04:01 | 26.63 | |||
| 18 | KNWMTETLLVQNANPDCK | A1 | TETLLVQNA | B*44:15 | 0.09 | TETLLVQNA | B*44:03 | 5.85 | |||
| KNWMTETLLVQNANPDCK | A1 | KNWMTETLL | A*23:01 | 0.80 | KNWMTETLL | A*23:01 | 25.75 | ||||
| 19 | FRDYVDRFFKTLRAEQA | A1 | FRDYVDRFF | Cw*04:01 | 0.03 | FRDYVDRFF | Cw*04:01 | 4.56 | |||
| FRDYVDRFFKTLRAEQA | A1 | FRDYVDRFF | A*23:01 | 0.60 | FRDYVDRFF | A*23:01 | 4.56 | ||||
| FRDYVDRFFKTLRAEQA | A1 | FRDYVDRFF | Cw*04:01 | 1.10 | FRDYVDRFF | Cw*04:01 | 0.68 | ||||
| 20 | GATLEEMMTACQGVGGPGH | A1 | EEMMTACQG | B*44:03 | 0.25 | EEMMTACQG | B*44:03 | 0.97 | |||
| 21 | LRALGPGATLEEMMTA | A1 | RALGPGATL | B*15:10 | 1.80 | RALGPGATL | B*44:01 | 0.56 | |||
| LRALGPGATLEEMMTA | A1 | RALGPGATL | Cw*04:01 | 0.60 | RALGPGATL | Cw*04:01 | 0.56 | ||||
| 22 | FFKTLRAEQATQEVKNWM | A1 | AEQATQEVK | B*44:03 | 0.15 | AEQATQEVK | B*44:03 | 8.59 | |||
| 23 | MEKEGKISKIGPENPY | A1 | SKIGPENPY | B*15:03 | 0.50 | SKIGPENPY | A*23:01 | 35.68 | |||
| MEKEGKISKIGPENPY | A1 | SKIGPENPY | B*15:10 | 0.50 | SKIGPENPY | B*44:03 | 9.49 | ||||
| 25 | WVKVIEEKAFSPEVIPMF | A1 | AFSPEVIPMF | A*23:01 | 0.40 | AFSPEVIPM | A*23:01 | 5.95 | |||
| WVKVIEEKAFSPEVIPMF | A1 | WVKVIEEKA | A*23:01 | 1.70 | WVKVIEEKA | A*23:01 | 17.53 | ||||
| WVKVIEEKAFSPEVIPMF | A1 | EEKAFSPEV | B*44:03 | 0.80 | EEKAFSPEV | B*44:03 | 3.38 | ||||
| WVKVIEEKAFSPEVIPMF | A1 | EEKAFSPEV | B*44:15 | 0.03 | EEKAFSPEV | ||||||
| WVKVIEEKAFSPEVIPMF | A1 | FSPEVIPMF | Cw*04:01 | 0.50 | FSPEVIPMF | Cw*04:01 | 1.63 | FSPEVIPMF | |||
| WVKVIEEKAFSPEVIPMF | A1 | FSPEVIPMF | Cw*16:01 | 0.50 | FSPEVIPMF | A*23:01 | 0.46 | ||||
| WVKVIEEKAFSPEVIPMF | A1 | KAFSPEVIP | Cw*16:01 | 1.20 | KAFSPEVIP | B*4403 | 35.68 | ||||
| 25 | HQMKDCTERQANFLGKIW | A1 | RQANFLGKI | B*4403 | 1.00 | RQANFLGKI | B*4403 | 11.67 | |||
| 26 | PMFSALSEGATPQDLNMM | A1 | SEGATPQDL | B*44:03 | 0.80 | SEGATPQDL | B*4403 | 0.33 | |||
| 27 | HLARNCRAPRKKGCWK | A1 | HLARNCRAP | A*74:01 | 0.60 | HLARNCRAP | A*23:01 | 35.46 | |||
| LVQNANPDCKSILRAL | A1 | ||||||||||
| 28 | VATLYCVHQRIDVKDTK | A1 | ATLYCVHQR | A*74:01 | 0.90 | ATLYCVHQR | A*23:01 | 21.03 | |||
| 29 | KIEEIQNKSKQKTQQAAA | A1 | EIQNKSKQK | A*74:01 | 1.03 | EIQNKSKQK | C*04:01 | 10.98 | |||
| 30 | AGPIPPGQMREPRGSDIA | A1 | AGPIPPGQM | B*15:10 | 0.60 | AGPIPPGQM | C*04:01 | 2.02 | |||
| SKQKTQQAAADTGNSSKV | A1 | ||||||||||
| E913 | A*02:01 | 31 | LWQRPLVTIKIGGQLKEA | D | LWQRPLVTI | A*02:01 | 1.60 | LWQRPLVTI | A*02:01 | 11.25 | |
| A*34:02 | LWQRPLVTIKIGGQLKEA | D | QRPLVTIKI | Cw*06:02 | 0.70 | QRPLVTIKI | Cw*06:02 | 16.29 | |||
| B*45:01 | LWQRPLVTIKIGGQLKEA | D | WQRPLVTIK | B*47:01 | 1.90 | WQRPLVTIK | B*45:01 | 19.93 | |||
| B*47:01 | 32 | TVPVKLKPGMDGPKVKQW | A1 | LKPGMDGPK | A*34:02 | 0.90 | LKPGMDGPK | Cw*06:02 | 26.76 | ||
| Cw*06:02 | |||||||||||
| Cw*16:01 | |||||||||||
| E914 | A*01:01 | 33 | DKWASLWNWFSITQWLWY | D | FSITQWLWY | A*01:01 | 0.06 | FSITQWLWY | B*07:02 | 24.05 | FSITQWLWY |
| A*02:01 | DKWASLWNWFSITQWLWY | D | KWASLWNWF | Cw*04:07 | 1.20 | ||||||
| B*07:02 | DKWASLWNWFSITQWLWY | D | SLWNWFSIT | A*02:01 | 1.66 | ||||||
| B*44:15 | 34 | PVDPDEVEKATEGENNSL | A1 | ATEGENNSL | A*01:01 | 1.74 | |||||
| Cw*04:07 | |||||||||||
| Cw*07:02 | |||||||||||
| L91 | A*02:01 | 35 | EQMHTDIISLWDQSLK | A1 | IISLWDQSLK | A*03:01 | 1.90 | IISLWDQSL | A*03:01 | 20.55 | ISLWDQSLK |
| A*03:01 | EQMHTDIISLWDQSLK | A1 | MHTDIISLW | B*58:02 | 0.90 | MHTDIISLW | A*03:01 | 23.95 | |||
| B*53:01 | EQMHTDIISLWDQSLK | A1 | MHTDIISLW | Cw*06:02 | 1.30 | MHTDIISLW | Cw*06:02 | 3.72 | |||
| B*58:02 | EQMHTDIISLWDQSLK | A1 | QMHTDIISL | A*02:01 | 1.90 | ||||||
| Cw*04:01 | EQMHTDIISLWDQSLK | A1 | QMHTDIISL | B*5301 | 1.20 | QMHTDIISL | B*5301 | 18.52 | |||
| Cw*06:02 | 36 | LETSEGCKQIIGQLQPAI | D | ILAQLQPAI | A*02:01 | 0.40 | |||||
| 37 | SGGKLDAWEKIRLRPGGK | A1 | KIRLRPGGK | A*03:01 | 0.25 | KIRLRPGGK | A*03:01 | 0.06 | KIRLRPGGK | ||
| 38 | LETTEGCQQIMEQLQPAL | A1 | IMEQLQPAL | A*03:01 | 0.40 | IMEQLQPAL | A*03:01 | 21.06 | |||
| LETTEGCQQIMEQLQPAL | A1 | IMEQLQPAL | Cw*04:01 | 0.80 | IMEQLQPAL | Cw*04:01 | 0.19 | ||||
| LETTEGCQQIMEQLQPAL | A1 | QIMEQLQPA | A*02:01 | 0.70 | |||||||
| 39 | ERILSTCLGRSAEPVPL | A1 | RSAEPVPL | B*58:02 | 0.12 | ||||||
| ERILSTCLGRSAEPVPL | A1 | RILSTCLGR | A*03:01 | 0.90 | RILSTCLGR | A*03:01 | 0.11 | ||||
| ERILSTCLGRSAEPVPL | A1 | CLGRSAEPV | A*02:01 | 2.00 | |||||||
| 40 | LVGPTPVNIIGRNMLTQI | A1 | LVGPTPVNI | A*02:01 | 1.61 | LVGPTPVNI | :01 | 4.69 | |||
| 41 | CKQIIGQLQPAIQTGSEEL | D | QIIGQLQPA | A*02:01 | 1.80 | ||||||
| CKQIIGQLQPAIQTGSEEL | D | AIQTGSEEL | A*03:01 | 1.50 | AIQTGSEEL | A*03:01 | 21.04 | ||||
| CKQIIGQLQPAIQTGSEEL | D | IIGQLQPAI | A*03:01 | 1.10 | |||||||
| 42 | PAIQTGSEELRSLYNTVA | D | AIQTGSEEL | A*03:01 | 1.50 | AIQTGSEEL | Cw*06:02 | 3.74 | |||
| PAIQTGSEELRSLYNTVA | D | LRSLYNTVA | Cw*06:02 | 0.70 | LRSLYNTVA | Cw*06:02 | 5.48 | ||||
| L92 | A*02:01 | 43 | NDIQKLVGKLNWASQIYP | D | KLNWASQIY | A*30:02 | 0.50 | KLNWASQIY | A*30:02 | 5.48 | KLNWASQIY |
| A*30:02 | NDIQKLVGKLNWASQIYP | D | KLVGKLNWA | A*02:01 | 0.60 | KLVGKLNWA | A*02:01 | 1.22 | |||
| B*44:03 | NDIQKLVGKLNWASQIYP | D | KLNWASQIY | A*02:01 | 0.90 | KLNWASQIY | A*02:01 | 11.10 | |||
| B*14:02 | NDIQKLVGKLNWASQIYP | D | KLNWASQIY | Cw*04:01 | 1.80 | KLNWASQIY | Cw*04:01 | 13.24 | |||
| Cw*04:01 | 44 | LVVKTYWGLHTGEREWHL | D | LVVKTYWGL | A*02:01 | 1.70 | LVVKTYWGL | A*02:01 | 0.95 | ||
| Cw*08:02 | LVVKTYWGLHTGEREWHL | D | VVKTYWGLH | A*30:02 | 1.50 | ||||||
| 45 | SLVNRVRQGYSPLSFQTL | D | NRVRQGYSPL | B*14:02 | 0.12 | ||||||
| SLVNRVRQGYSPLSFQTL | D | YSPLSFQTL | Cw*04:01 | 0.70 | YSPLSFQTL | Cw*04:01 | 2.47 | ||||
| SLVNRVRQGYSPLSFQTL | D | RQGYSPLSF | A*30:02 | 1.20 | RQGYSPLSF | A*30:02 | 4.51 | RQGYSPLSF | |||
| SLVNRVRQGYSPLSFQTL | D | RQGYSPLSF | Cw*04:01 | 1.40 | RQGYSPLSF | Cw*04:01 | 3.12 | ||||
| 46 | TLPCRIKQIINMWQGV | D | CRIKQIINM | A*02:02 | 0.40 | CRIKQIINM | A*30:02 | 28.36 | CRIKQIINM | ||
| 47 | MRVRGIQRNYQHLWRW | D | RNYQHLWRW | B*44:03 | 0.40 | RNYQHLWRW | B*44:03 | 3.17 | |||
| 48 | GEMKNCSFNITTEIRDKK | D | EMKNCSFNI | B*44:03 | 0.30 | EMKNCSFNI | B*44:03 | 32.11 | |||
| 49 | NVTENFNMWKNNMVEQMH | D | NFNMWKNNM | Cw*04:01 | 1.06 | NFNMWKNNM | Cw*04:02 | 4.53 | |||
| NVTENFNMWKNNMVEQMH | D | TENFNMWKNNM | B*44:03 | 1.81 | TENFNMWKN | B*44:03 | 7.71 | ||||
| 50 | WLIDRIRERAEDSGNESE | D | WLIDRIRER | A*02:01 | 2.00 | WLIDRIRER | A*02:01 | 4.68 | |||
| L94 | A*3402 | 51 | LIHLHYFDCFSDSAIRKA | A1 | YFDCFSDSA | Cw*04:01 | 0.90 | YFDCFSDSA | Cw*04:01 | 2.52 | |
| A*7401 | LIHLHYFDCFSDSAIRKA | A1 | YFDCFSDSA | Cw*06:02 | 1.60 | YFDCFSDSA | Cw*06:02 | 14.91 | |||
| B*4403 | LIHLHYFDCFSDSAIRKA | A1 | HLHYFDCFSDSAIR | A*7401 | 1.40 | ||||||
| B*5802 | LIHLHYFDCFSDSAIRKA | A1 | FSDSAIRKA | Cw*04:01 | 1.10 | FSDSAIRKA | Cw*04:01 | 0.78 | |||
| Cw*0401 | 52 | HLARNCRAPRKKGCWK | A1 | ARNCRAPRK | A*3402 | 1.10 | |||||
| Cw*0602 | HLARNCRAPRKKGCWK | A1 | HLARNCRAP | A*3402 | 1.50 | ||||||
| HLARNCRAPRKKGCWK | A1 | HLARNCRAP | A*74:01 | 0.60 | |||||||
| 53 | SKQKTQQAAADTGNSSKV | A1 | AADTGNSSK | A*3402 | 1.15 | ||||||
| 54 | HQDPIPKQPSSQPRGD | D | HQDPIPKQP | Cw*04:01 | 0.60 | HQDPIPKQP | Cw*04:01 | 7.89 | |||
| L95 | A*23:01 | 55 | KRWIILGLNKIVRMYSPV | A1 | WIILGLNKI | A*23:01 | 0.60 | WIILGLNKI | A*23:01 | 6.99 | |
| A*74:01 | KRWIILGLNKIVRMYSPV | A1 | IILGLNKIV | A*74:01 | 0.60 | IILGLNKIV | Cw*04:01 | 2.81 | |||
| B*44:03 | 56 | NMMLNIVGGHQAAMQMLK | A1 | GHQAAMQML | B*15:10 | 0.40 | |||||
| B*15:10 | NMMLNIVGGHQAAMQMLK | A1 | HQAAMQMLK | A*74:01 | 0.90 | HQAAMQMLK | |||||
| Cw*04:01 | NMMLNIVGGHQAAMQMLK | A1 | HQAAMQMLK | Cw*04:01 | 1.30 | HQAAMQMLK | Cw*04:01 | 26.63 | |||
| Cw*16:01 | 57 | EVNIVTDSQYALGIIQA | A1 | EVNIVTDSQ | B*44:03 | 0.50 | EVNIVTDSQ | B*44:03 | 19.78 | ||
| 58 | AYETEMHNVWATHACV | A1 | TEMHNVWAT | B*44:03 | 0.40 | TEMHNVWAT | B*44:03 | 0.88 | YETEMHNVW | ||
| AYETEMHNVWATHACV | A1 | MHNVWATHA | B*15:10 | 0.90 | MHNVWATHA | Cw*04:01 | 11.32 | ||||
| AYETEMHNVWATHACV | A1 | MHNVWATHA | B*44:03 | 0.90 | MHNVWATHA | B*44:04 | 22.06 | ||||
| 59 | AAEWDRLHPVHAGPI | A1 | AAEWDRLHP | B*44:03 | 0.50 | AAEWDRLHP | B*44:03 | 34.74 | AEWDRLHPV | ||
| AAEWDRLHPVHAGPI | A1 | LHPVHAGPI | B*15:10 | 0.15 | AAEWDRLHP | A*23:01 | 34.79 | ||||
| AAEWDRLHPVHAGPI | A1 | RLHPVHAGP | A*74:01 | 1.50 | AAEWDRLHP | Cw*04:01 | 6.59 | ||||
| 60 | LRALGPGATLEEMMTA | A1 | RALGPGATL | B*15:10 | 0.60 | RALGPGATL | A*23:01 | 8.98 | |||
| LRALGPGATLEEMMTA | A1 | RALGPGATL | Cw*04:01 | 0.60 | RALGPGATL | Cw*04:01 | 0.56 | ||||
| 61 | FFKTLRAEQATQEVKNWM | A1 | AEQATQEVK | B*44:03 | 0.15 | AEQATQEVK | B*44:03 | 8.59 | |||
| 62 | GTTSTPQEQIGWMTGNPPI | A1 | QEQIGWMTG | B*44:15 | 0.65 | QEQIGWMTG | B*44:03 | 1.85 | |||
| GTTSTPQEQIGWMTGNPPI | A1 | GWMTGNPPI | A*23:01 | 1.40 | GWMTGNPPI | A*23:01 | 0.75 | ||||
| 63 | WVKVIEEKAFSPEVIPMF | A1 | EEKAFSPEV | B*44:15 | 0.62 | ||||||
| WVKVIEEKAFSPEVIPMF | A1 | EEKAFSPEV | B*44:03 | 0.80 | EEKAFSPEV | B*44:03 | 3.38 | EEKAFSPEV | |||
| WVKVIEEKAFSPEVIPMF | A1 | WVKVIEEKA | A*23:01 | 1.70 | WVKVIEEKA | A*23:01 | 34.76 | ||||
| WVKVIEEKAFSPEVIPMF | A1 | FSPEVIPMF | Cw*04:01 | 0.50 | FSPEVIPMF | Cw*04:01 | 1.63 | ||||
| WVKVIEEKAFSPEVIPMF | A1 | AFSPEVIPM | Cw*16:01 | 0.70 | AFSPEVIPM | Cw*04:01 | 0.28 | ||||
| WVKVIEEKAFSPEVIPMF | A1 | KAFSPEVIP | Cw*16:01 | 1.20 | KAFSPEVIP | Cw*04:01 | 7.47 | ||||
| 64 | TVYYGVPVWKDAETTLF | A1 | TVYYGVPVW | A*74:01 | 0.17 | TVYYGVPVW | B*44:03 | 7.96 | VYYGVPVWK | ||
| TVYYGVPVWKDAETTLF | A1 | TVYYGVPVW | Cw*16:01 | 1.10 | TVYYGVPVW | Cw*04:01 | 1.25 | ||||
| TVYYGVPVWKDAETTLF | A1 | WKDAETTLF | B*15:10 | 0.90 | |||||||
| TVYYGVPVWKDAETTLF | A1 | VWKDAETTL | A*23:01 | 0.60 | WKDAETTLF | A*23:01 | 4.36 | ||||
| TVYYGVPVWKDAETTLF | A1 | VWKDAETTL | Cw*04:01 | 0.60 | VWKDAETTL | Cw*04:01 | 1.97 | ||||
| 65 | LRWGTMILGMIIICSAA | A1 | RWGTMILGM | A*23:01 | 0.90 | RWGTMILGM | A*23:01 | 3.97 | |||
| LRWGTMILGMIIICSAA | A1 | RWGTMILGM | Cw*04:01 | 0.94 | RWGTMILGM | Cw*04:01 | 1.34 | ||||
| 66 | GHQAAMQMLKDTINEEAA | A1 | HQAAMQMLK | A*74:01 | 0.90 | HQAAMQMLK | A*23:01 | 32.48 | |||
| 67 | IKQGPKEPFRDYVDRFFK | A1 | FRDYVDRFF | A*23:01 | 0.60 | FRDYVDRFF | A*23:01 | 10.14 | |||
| IKQGPKEPFRDYVDRFFK | A1 | FRDYVDRFF | Cw*04:01 | 0.60 | FRDYVDRFF | Cw*04:01 | 0.68 | ||||
| 68 | FRDYVDRFFKTLRAEQA | A1 | FRDYVDRFF | A*23:01 | 0.60 | FRDYVDRFF | A*23:01 | 10.14 | |||
| LVQNANPDCKSILRAL | A1 | ||||||||||
| 69 | MREPRGSDIAGTTSTPQEQI | A1 | MREPRGSDI | B*15:10 | 2.00 | MREPRGSDI | Cw*04:01 | 1.95 | |||
| 70 | EKIRLRPGGKKKYRLKHL | A1 | RLRPGGKKK | A*74:01 | 0.28 | RLRPGGKKK | A*23:01 | 28.99 | |||
| 71 | VATLYCVHQRIDVKDTK | A1 | ATLYCVHQR | A*74:01 | 0.90 | ATLYCVHQR | B*44:03 | 28.12 | |||
| 72 | LFCASDAKAYETEMHNVW | A1 | SDAKAYETEMHNVW | B*44:03 | 0.31 | KAYETEMHN | B*44:03 | 35.92 | |||
| L913 | A*02:01 | 73 | PPLVKLWYQLEKEPIIGA | D | LVKLWYQLE | A*34:01 | 0.50 | LVKLWYQLE | A*02:01 | 18.93 | |
| A*34:02 | PPLVKLWYQLEKEPIIGA | D | KLWYQLEKEPIIGA | A*02:01 | 1.47 | WYQLEKEPI | A*02:01 | 18.24 | |||
| B*45:01 | PPLVKLWYQLEKEPIIGA | D | QLEKEPIIG | B*45:01 | 0.90 | QLEKEPIIG | B*45:01 | 17.25 | |||
| B*47:01 | PPLVKLWYQLEKEPIIGA | D | YQLEKEPII | A*02:01 | 0.80 | YQLEKEPII | A*02:01 | 0.25 | |||
| Cw*06:02 | PPLVKLWYQLEKEPIIGA | D | YQLEKEPII | B*47:01 | 1.20 | YQLEKEPII | Cw*06:02 | 2.05 | |||
| Cw*16:01 | 74 | KWKPKMIGGIGGFIKVR | D | MIGGIGGFIK | A*34:02 | 0.20 | |||||
| KWKPKMIGGIGGFIKVR | D | KMIGGIGGF | A*02:01 | 1.00 | KMIGGIGGF | A*02:01 | 1.55 | ||||
| KWKPKMIGGIGGFIKVR | D | KMIGGIGGF | B*47:01 | 1.10 | KMIGGIGGF | Cw*06:02 | 5.37 | ||||
| 75 | VIWGKTPKFRLPIQKETW | D | IVIWGKTPK | A*34:02 | 0.15 | ||||||
| VIWGKTPKFRLPIQKETW | D | KTPKFRLPI | Cw*16:01 | 1.10 | KTPKFRLPI | A*02:01 | 4.43 | ||||
| VIWGKTPKFRLPIQKETW | D | VIWGKTPKF | A*34:02 | 1.00 | VIWGKTPKF | Cw*06:02 | 7.82 | ||||
| 76 | RQANFLGKIWPSHKGR | D | RQANFLGKI | B*47:01 | 0.40 | ||||||
| RQANFLGKIWPSHKGR | D | RQANFLGKI | Cw*06:02 | 2.00 | RQANFLGKI | Cw*06:02 | 9.23 | ||||
| RQANFLGKIWPSHKGR | D | FLGKIWPSH | A*34:02 | 1.10 | RQANFLGKI | B*45:01 | 7.03 | ||||
| 77 | KIEELREHLLRWGFTTPDK | D | REHLLRWGF | B*47:01 | 0.03 | REHLLRWGF | A*02:01 | 20.74 | |||
| KIEELREHLLRWGFTTPDK | D | REHLLRWGF | B*45:01 | 0.70 | REHLLRWGF | B*45:01 | 1.11 | ||||
| KIEELREHLLRWGFTTPDK | D | LREHLLRWG | Cw*06:02 | 1.40 | LREHLLRWG | Cw*06:02 | 19.44 | ||||
| KIEELREHLLRWGFTTPDK | D | HLLRWGFTT | A*02:01 | 1.20 | HLLRWGFTT | A*02:01 | 0.20 | ||||
| 78 | GFAILKCKDKEFNGTGPCK | A1 | KEFNGTGPC | B*45:01 | 1.50 | KEFNGTGPC | B*45:01 | 1.25 | |||
| 79 | AILNIPTRIRQGLERALL | D | IRQGLERAL | Cw*06:02 | 0.60 | IRQGLERAL | Cw*06:02 | 0.71 | |||
| AILNIPTRIRQGLERALL | D | AILNIPTRI | A*02:01 | 0.60 | |||||||
| AILNIPTRIRQGLERALL | D | RQGLERALL | B*47:01 | 1.70 | RQGLERALL | B*45:01 | 13.50 | ||||
| 80 | QKTELQAINLALQDSGLEV | D | LALQDSGLE | A*02:01 | 1.50 | LALQDSGLE | A*02:01 | 22.65 | |||
| QKTELQAINLALQDSGLEV | D | TELQAINLA | B*47:01 | 0.60 | TELQAINLA | B*45:01 | 0.15 | ||||
| QKTELQAINLALQDSGLEV | D | QKTELQAIN | B*45:01 | 1.00 | QKTELQAIN | B*45:01 | 12.04 | ||||
| QKTELQAINLALQDSGLEV | D | NLALQDSGL | A*34:02 | 1.50 | NLALQDSGL | A*02:01 | 4.72 | ||||
| 81 | IIGRNLLTQIGCTLNFPI | D | IGCTLNFPI | A*02:01 | 0.90 | IGCTLNFPI | A*02:01 | 4.79 | |||
| IIGRNLLTQIGCTLNFPI | D | NLLTQIGCTLNFPI | A*02:01 | 1.63 | |||||||
| IIGRNLLTQIGCTLNFPI | D | LLTQIGCTL | A*02:01 | 1.90 | LLTQIGCTL | A*02:01 | 0.53 | ||||
| IIGRNLLTQIGCTLNFPI | D | TQIGCTLNF | Cw*16:01 | 1.40 | TQIGCTLNF | Cw*06:02 | 2.26 | ||||
| IIGRNLLTQIGCTLNFPI | D | LLTQIGCTL | Cw*16:01 | 0.90 | |||||||
| 82 | KWKPKMIGGIGGFIKVR | D | KMIGGIGGF | A*02:01 | 1.00 | KMIGGIGGF | A*02:01 | 1.55 | |||
| 83 | LWQRPLVTIKIGGQLKEA | D | LWQRPLVTI | A*02:01 | 1.60 | LWQRPLVTI | A*02:01 | 11.25 | |||
| LWQRPLVTIKIGGQLKEA | D | QRPLVTIKI | Cw*06:02 | 0.70 | LWQRPLVTI | Cw*06:02 | 0.74 | ||||
| 84 | LKEALLDTGADDTVLEEI | D | LKEALLDTG | B*45:01 | 1.20 | LKEALLDTG | B*45:01 | 12.15 | |||
| 85 | KRQEILDLWVYHTQGYF | A1 | QEILDLWVY | B*45:01 | 1.70 | QEILDLWVY | B*45:01 | 1.02 | |||
| KRQEILDLWVYHTQGYF | A1 | QEILDLWVY | B*47:01 | 0.90 | |||||||
| KRQEILDLWVYHTQGYF | A1 | RQEILDLWV | Cw*06:02 | 1.10 | RQEILDLWV | Cw*06:02 | 21.81 | ||||
| KRQEILDLWVYHTQGYF | A1 | ILDLWVYHT | A*02:01 | 0.70 | ILDLWVYHT | B*45:01 | 13.80 | ||||
| IYSLIEESQNQQEKNEQEL | D | ||||||||||
| L914 | A*01:01 | 86 | SFNCGGEFFYCNTSGLF | A1 | SFNCGGEFFY | A*01:01 | 0.25 | ||||
| A*02:01 | SFNCGGEFFYCNTSGLF | A1 | SFNCGGEFF | Cw*04:07 | 1.30 | SFNCGGEFF | B*44:03 | 7.72 | |||
| B*07:02 | SFNCGGEFFYCNTSGLF | A1 | SFNCGGEFF | Cw*07:02 | 1.10 | SFNCGGEFF | B*07:02 | 22.45 | |||
| B*44:03 | SFNCGGEFFYCNTSGLF | A1 | GEFFYCNTS | B*44:03 | 1.30 | GEFFYCNTS | B*44:03 | 1.80 | |||
| Cw*04:07 | 87 | MEKEGKISKIGPENPY | A1 | KEGKISKIGPENPY | B*44:03 | 1.30 | KISKIGPEN | B*44:03 | 39.08 | ||
| Cw*07:02 | MEKEGKISKIGPENPY | A1 | ISKIGPENP | A*01:01 | 1.80 | ISKIGPENP | B*07:02 | 27.27 | |||
| 88 | ARKNRRRRWRARQRQI | A1 | RRWRARQRQ | Cw*07:02 | 0.60 | RRWRARQRQ | Cw*07:02 | 19.17 |
Experimentally mapped peptides for all participants and their cognate computational core 9-mer and a single 14-mer epitope sequence with scores. Peptides shown in italic text were not algorithmically predicted as binders. Multiple computational predictions contained in a single experimental peptide were counted as a single hit. Participant’s identifiers (ID) beginning with E or L represent early or late time sampling points respectively